Detailed information of deep learning profile BP001323.1

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This page shows detailed deep learning-derived predictions and motifs for MEF2C in GM12878 using a single trained BPNet model.

Model details

Name: MEF2C
Model ID: BP001323.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Regulators of differentiation
JASPAR ID: MA0497.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06413  
Source: ENCSR000BNG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.05 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.02 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.00 0.05 -0.00 0.04 0.04 0.04 0.02 0.01 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 756 750 717 755 717 763 761 802 764 773 760 789 720 690 662 794 792 826 790 816 346 69 7 2662 296 316 72 308 554 32 253 926 863 654 610 645 669 769 757 751 715 750 727 761 750 736 690 749 755 749 ]
C [ 575 593 631 597 576 567 545 553 520 518 560 592 647 640 683 707 611 442 387 149 217 2081 36 4 4 16 151 519 70 4 170 867 642 776 653 531 541 519 587 505 568 554 595 593 602 579 574 578 565 539 ]
G [ 581 540 533 578 586 575 565 560 612 576 575 550 539 542 568 435 509 772 690 709 1046 79 1 1 0 3 3 106 490 2669 1620 353 355 459 505 656 718 676 623 597 617 547 569 514 559 553 615 553 574 625 ]
T [ 796 825 827 778 829 803 837 793 812 841 813 777 802 836 795 772 796 668 841 1034 1099 479 2664 41 2408 2373 2482 1775 1594 3 665 562 848 819 940 876 780 744 741 855 808 857 817 840 797 840 829 828 814 795 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.03 0.06 0.01 0.01 -0.01 0.00 -0.00 0.03 -0.00 0.01 0.00 -0.00 -0.00 ]
C [ 0.01 0.00 -0.00 -0.00 0.04 -0.01 -0.04 -0.04 -0.02 -0.00 0.00 0.01 -0.02 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 -0.01 -0.04 -0.03 -0.03 -0.05 -0.04 -0.02 -0.00 0.04 0.03 -0.00 0.00 0.00 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.01 0.05 -0.01 0.04 0.04 0.04 0.02 0.01 -0.03 0.00 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4018

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1806

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 449

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 207

CWM

PFM

     

HCWM