Detailed information of deep learning profile BP001323.1

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This page shows detailed deep learning-derived predictions and motifs for MEF2C in GM12878 using a single trained BPNet model.

Model details

Name: MEF2C
Model ID: BP001323.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Regulators of differentiation
JASPAR ID: MA0497.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06413  
Source: ENCSR000BNG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.02 0.04 0.04 0.04 -0.00 0.05 0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.02 0.04 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.05 0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 795 814 828 829 840 797 840 817 857 808 855 741 744 780 876 940 819 848 562 665 3 1594 1775 2482 2373 2408 41 2664 479 1099 1034 841 668 796 772 795 836 802 777 813 841 812 793 837 803 829 778 827 825 796 ]
C [ 625 574 553 615 553 559 514 569 547 617 597 623 676 718 656 505 459 355 353 1620 2669 490 106 3 3 0 1 1 79 1046 709 690 772 509 435 568 542 539 550 575 576 612 560 565 575 586 578 533 540 581 ]
G [ 539 565 578 574 579 602 593 595 554 568 505 587 519 541 531 653 776 642 867 170 4 70 519 151 16 4 4 36 2081 217 149 387 442 611 707 683 640 647 592 560 518 520 553 545 567 576 597 631 593 575 ]
T [ 749 755 749 690 736 750 761 727 750 715 751 757 769 669 645 610 654 863 926 253 32 554 308 72 316 296 2662 7 69 346 816 790 826 792 794 662 690 720 789 760 773 764 802 761 763 717 755 717 750 756 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.00 -0.03 0.01 0.02 0.04 0.04 0.04 -0.01 0.05 0.01 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.00 0.00 -0.00 0.03 0.04 -0.00 -0.02 -0.04 -0.05 -0.03 -0.03 -0.04 -0.01 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 -0.00 -0.02 0.01 0.00 -0.00 -0.02 -0.04 -0.04 -0.01 0.04 -0.00 -0.00 0.00 0.01 ]
T [ -0.00 -0.00 0.00 0.01 -0.00 0.03 -0.00 0.00 -0.01 0.01 0.01 0.06 -0.03 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4018

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1806

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 568

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 449

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 207

CWM

PFM

     

HCWM