Detailed information of deep learning profile BP001315.1

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This page shows detailed deep learning-derived predictions and motifs for KLF13 in K562 using a single trained BPNet model.

Model details

Name: KLF13
Model ID: BP001315.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0657.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y2Y9  
Source: ENCSR608HVP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 0.00 -0.00 0.01 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.02 0.03 -0.00 0.03 0.00 0.01 0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.01 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1010 1052 1090 1033 1050 1088 1070 1026 1028 1074 1014 993 989 1129 1075 970 965 1323 893 1874 2602 993 651 186 2 5 195 58 35 703 638 446 860 641 821 911 1074 993 949 939 996 1000 1050 1039 962 1091 990 923 983 974 ]
C [ 1841 1829 1715 1661 1804 1790 1873 1705 1792 1711 1652 1740 1726 1595 1557 2055 2062 1473 1725 1302 729 197 30 19 11 6 4851 3 406 475 626 3611 2639 1880 1950 1807 1688 1779 1671 1708 1734 1871 1704 1733 1744 1752 1752 1812 1765 1843 ]
G [ 1938 1925 1929 2047 1931 1892 1947 1984 1949 1990 2138 2190 2112 2136 2303 1961 2009 2176 2538 1963 1860 4442 3412 5416 5761 5766 2 5718 3106 3878 3614 931 1240 2479 2096 2097 2068 2124 2150 2189 2035 2019 1997 2104 2051 1986 2052 1925 1963 1965 ]
T [ 990 973 1045 1038 994 1009 889 1064 1010 1004 975 856 952 919 844 793 743 807 623 640 588 147 1686 158 5 2 731 0 2232 723 901 791 1040 779 912 964 949 883 1009 943 1014 889 1028 903 1022 950 985 1119 1068 997 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 -0.02 -0.01 -0.01 -0.01 -0.02 -0.00 -0.00 -0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.01 -0.01 -0.01 0.00 -0.02 0.02 -0.01 -0.00 -0.00 -0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.02 0.03 -0.02 0.03 0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.02 -0.02 0.00 -0.02 0.01 0.00 -0.00 0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1040

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 531

CWM

PFM

     

HCWM