Detailed information of deep learning profile BP001315.1

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This page shows detailed deep learning-derived predictions and motifs for KLF13 in K562 using a single trained BPNet model.

Model details

Name: KLF13
Model ID: BP001315.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0657.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y2Y9  
Source: ENCSR608HVP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.01 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 0.00 0.01 0.00 0.03 -0.00 0.03 0.02 0.02 0.01 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.01 -0.00 0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 997 1068 1119 985 950 1022 903 1028 889 1014 943 1009 883 949 964 912 779 1040 791 901 723 2232 0 731 2 5 158 1686 147 588 640 623 807 743 793 844 919 952 856 975 1004 1010 1064 889 1009 994 1038 1045 973 990 ]
C [ 1965 1963 1925 2052 1986 2051 2104 1997 2019 2035 2189 2150 2124 2068 2097 2096 2479 1240 931 3614 3878 3106 5718 2 5766 5761 5416 3412 4442 1860 1963 2538 2176 2009 1961 2303 2136 2112 2190 2138 1990 1949 1984 1947 1892 1931 2047 1929 1925 1938 ]
G [ 1843 1765 1812 1752 1752 1744 1733 1704 1871 1734 1708 1671 1779 1688 1807 1950 1880 2639 3611 626 475 406 3 4851 6 11 19 30 197 729 1302 1725 1473 2062 2055 1557 1595 1726 1740 1652 1711 1792 1705 1873 1790 1804 1661 1715 1829 1841 ]
T [ 974 983 923 990 1091 962 1039 1050 1000 996 939 949 993 1074 911 821 641 860 446 638 703 35 58 195 5 2 186 651 993 2602 1874 893 1323 965 970 1075 1129 989 993 1014 1074 1028 1026 1070 1088 1050 1033 1090 1052 1010 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.00 -0.00 0.00 0.01 -0.02 0.00 -0.02 -0.02 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 0.03 -0.02 0.03 0.02 0.02 0.01 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.02 0.00 -0.01 -0.01 -0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 -0.00 -0.00 -0.02 -0.01 -0.01 -0.01 -0.02 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1040

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 531

CWM

PFM

     

HCWM