Detailed information of deep learning profile BP001311.1

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This page shows detailed deep learning-derived predictions and motifs for KLF4 in MCF-7 using a single trained BPNet model.

Model details

Name: KLF4
Model ID: BP001311.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0039.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O43474  
Source: ENCSR265WJC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.02 0.00 0.00 -0.00 -0.00 0.01 ]
G [ 0.00 0.00 -0.00 0.00 0.04 0.05 0.06 0.00 0.05 0.00 0.02 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1625 1705 1604 1653 1685 1657 1687 1599 1713 1540 1493 1533 1360 1439 1605 1596 1748 1541 1608 1462 2086 3135 398 1 0 446 82 168 1156 541 624 1024 1240 1354 1486 1649 1623 1613 1684 1537 1588 1548 1590 1607 1707 1707 1559 1601 1561 1547 ]
C [ 2439 2338 2382 2449 2392 2316 2303 2321 2288 2233 2347 2389 2879 2840 2490 2418 2042 2033 1901 2350 3057 588 5 2 6 4758 10 491 517 759 5056 4370 2926 2456 2324 2205 2294 2379 2135 2410 2543 2280 2283 2347 2270 2443 2323 2512 2481 2430 ]
G [ 2735 2705 2773 2631 2662 2815 2765 2843 2789 2857 2897 2897 2451 2422 2596 2942 3162 3522 3624 3325 1820 1997 7964 8365 8364 7 8238 3956 5748 5905 1053 1344 2870 3026 2964 2804 2781 2671 3032 2882 2732 2821 2927 2729 2890 2662 2763 2674 2737 2766 ]
T [ 1573 1624 1613 1639 1633 1584 1617 1609 1582 1742 1635 1553 1682 1671 1681 1416 1420 1276 1239 1235 1409 2652 5 4 2 3161 42 3757 951 1167 1639 1634 1336 1536 1598 1714 1674 1709 1521 1543 1509 1723 1572 1689 1505 1560 1727 1585 1593 1629 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 0.01 0.00 -0.03 -0.03 -0.01 -0.02 -0.02 -0.00 -0.01 -0.01 -0.01 ]
C [ 0.01 0.01 0.01 -0.00 -0.02 -0.01 -0.02 0.04 -0.03 0.00 -0.01 -0.00 0.02 0.01 ]
G [ 0.01 0.01 -0.00 0.00 0.04 0.05 0.06 -0.04 0.05 0.01 0.02 0.02 -0.00 0.01 ]
T [ -0.01 -0.01 -0.00 -0.00 -0.04 -0.03 -0.02 0.01 -0.02 0.01 -0.00 0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 808

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 714

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 279

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 48

CWM

PFM

     

HCWM