Detailed information of deep learning profile BP001311.1

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This page shows detailed deep learning-derived predictions and motifs for KLF4 in MCF-7 using a single trained BPNet model.

Model details

Name: KLF4
Model ID: BP001311.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
JASPAR ID: MA0039.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O43474  
Source: ENCSR265WJC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.02 0.00 0.05 0.00 0.06 0.05 0.04 0.00 -0.00 0.00 0.00 ]
G [ 0.01 -0.00 -0.00 0.00 0.00 0.02 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1629 1593 1585 1727 1560 1505 1689 1572 1723 1509 1543 1521 1709 1674 1714 1598 1536 1336 1634 1639 1167 951 3757 42 3161 2 4 5 2652 1409 1235 1239 1276 1420 1416 1681 1671 1682 1553 1635 1742 1582 1609 1617 1584 1633 1639 1613 1624 1573 ]
C [ 2766 2737 2674 2763 2662 2890 2729 2927 2821 2732 2882 3032 2671 2781 2804 2964 3026 2870 1344 1053 5905 5748 3956 8238 7 8364 8365 7964 1997 1820 3325 3624 3522 3162 2942 2596 2422 2451 2897 2897 2857 2789 2843 2765 2815 2662 2631 2773 2705 2735 ]
G [ 2430 2481 2512 2323 2443 2270 2347 2283 2280 2543 2410 2135 2379 2294 2205 2324 2456 2926 4370 5056 759 517 491 10 4758 6 2 5 588 3057 2350 1901 2033 2042 2418 2490 2840 2879 2389 2347 2233 2288 2321 2303 2316 2392 2449 2382 2338 2439 ]
T [ 1547 1561 1601 1559 1707 1707 1607 1590 1548 1588 1537 1684 1613 1623 1649 1486 1354 1240 1024 624 541 1156 168 82 446 0 1 398 3135 2086 1462 1608 1541 1748 1596 1605 1439 1360 1533 1493 1540 1713 1599 1687 1657 1685 1653 1604 1705 1625 ]

Hypothetical CWM

   
A [ -0.01 -0.00 0.00 -0.00 0.01 -0.02 0.01 -0.02 -0.03 -0.04 -0.00 -0.00 -0.01 -0.01 ]
C [ 0.01 -0.00 0.02 0.02 0.01 0.05 -0.04 0.06 0.05 0.04 0.00 -0.00 0.01 0.01 ]
G [ 0.01 0.02 -0.00 -0.01 0.00 -0.03 0.04 -0.02 -0.01 -0.02 -0.00 0.01 0.01 0.01 ]
T [ -0.01 -0.01 -0.01 -0.00 -0.02 -0.02 -0.01 -0.03 -0.03 0.00 0.01 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 808

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 714

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 279

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 48

CWM

PFM

     

HCWM