Detailed information of deep learning profile BP001302.1

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This page shows detailed deep learning-derived predictions and motifs for FOXF2 in A549 using a single trained BPNet model.

Model details

Name: FOXF2
Model ID: BP001302.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0030.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q12947  
Source: ENCSR445FHB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.01 0.00 0.00 -0.00 0.02 0.01 0.02 0.00 0.02 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2110 2076 2155 2141 2174 2078 2145 2262 2190 2029 2026 2270 2132 1966 1980 2350 2087 2936 3766 2929 3107 19 6845 6804 6953 8 6795 3054 2781 1590 2503 2222 2159 2096 2423 2171 2066 2094 2313 2230 2181 2133 2240 2210 2135 2099 2211 2169 2106 2155 ]
C [ 1467 1432 1454 1445 1435 1458 1469 1371 1421 1419 1545 1492 1509 1425 1665 1562 1542 805 901 521 257 780 207 143 15 5673 61 1150 1158 1674 1481 1578 1379 1497 1309 1352 1352 1442 1439 1426 1397 1494 1482 1487 1410 1491 1504 1486 1475 1429 ]
G [ 1477 1460 1482 1487 1534 1354 1474 1388 1546 1582 1389 1469 1443 1323 1540 1451 1087 637 1447 896 3450 41 2 36 54 4 21 1123 1212 1950 1543 1458 1566 1497 1495 1582 1510 1575 1401 1443 1443 1458 1430 1407 1566 1506 1487 1434 1479 1530 ]
T [ 2015 2101 1978 1996 1926 2179 1981 2048 1912 2039 2109 1838 1985 2355 1884 1706 2353 2691 955 2723 255 6229 15 86 47 1384 192 1742 1918 1855 1542 1811 1965 1979 1842 1964 2141 1958 1916 1970 2048 1984 1917 1965 1958 1973 1867 1980 2009 1955 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 -0.02 0.02 0.01 0.02 -0.02 0.02 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.01 0.00 -0.01 0.01 0.00 -0.00 -0.01 0.02 -0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.01 0.00 -0.01 0.01 -0.01 -0.02 -0.01 -0.01 -0.01 -0.01 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.01 -0.01 0.00 -0.01 0.02 -0.02 -0.01 -0.01 0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3574

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1062

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 801

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 176

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 50

CWM

PFM

     

HCWM