Detailed information of deep learning profile BP001302.1

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This page shows detailed deep learning-derived predictions and motifs for FOXF2 in A549 using a single trained BPNet model.

Model details

Name: FOXF2
Model ID: BP001302.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0030.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q12947  
Source: ENCSR445FHB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.02 0.00 0.02 0.01 0.02 -0.00 0.00 0.00 0.01 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1955 2009 1980 1867 1973 1958 1965 1917 1984 2048 1970 1916 1958 2141 1964 1842 1979 1965 1811 1542 1855 1918 1742 192 1384 47 86 15 6229 255 2723 955 2691 2353 1706 1884 2355 1985 1838 2109 2039 1912 2048 1981 2179 1926 1996 1978 2101 2015 ]
C [ 1530 1479 1434 1487 1506 1566 1407 1430 1458 1443 1443 1401 1575 1510 1582 1495 1497 1566 1458 1543 1950 1212 1123 21 4 54 36 2 41 3450 896 1447 637 1087 1451 1540 1323 1443 1469 1389 1582 1546 1388 1474 1354 1534 1487 1482 1460 1477 ]
G [ 1429 1475 1486 1504 1491 1410 1487 1482 1494 1397 1426 1439 1442 1352 1352 1309 1497 1379 1578 1481 1674 1158 1150 61 5673 15 143 207 780 257 521 901 805 1542 1562 1665 1425 1509 1492 1545 1419 1421 1371 1469 1458 1435 1445 1454 1432 1467 ]
T [ 2155 2106 2169 2211 2099 2135 2210 2240 2133 2181 2230 2313 2094 2066 2171 2423 2096 2159 2222 2503 1590 2781 3054 6795 8 6953 6804 6845 19 3107 2929 3766 2936 2087 2350 1980 1966 2132 2270 2026 2029 2190 2262 2145 2078 2174 2141 2155 2076 2110 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.01 -0.01 -0.02 0.02 -0.01 0.00 -0.01 0.01 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.02 -0.01 0.01 -0.01 0.00 -0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.01 0.02 -0.01 -0.00 0.00 0.01 -0.01 0.00 -0.01 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.02 -0.02 0.02 0.01 0.02 -0.02 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3574

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1062

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 801

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 176

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 50

CWM

PFM

     

HCWM