Detailed information of deep learning profile BP001297.1

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This page shows detailed deep learning-derived predictions and motifs for BNC2 in SK-N-SH using a single trained BPNet model.

Model details

Name: BNC2
Model ID: BP001297.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA1928.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q6ZN30  
Source: ENCSR754GYI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.01 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1889 1830 1925 1949 1969 1734 1782 1777 1800 1888 2138 1827 1807 1627 1838 3325 6 38 6516 781 77 445 6532 366 1745 1677 1678 1612 1741 1997 1913 1912 1952 2046 1813 1680 1844 1849 1909 1962 1853 1945 1842 1872 1870 1832 1878 1948 1869 1871 ]
C [ 1379 1360 1436 1542 1360 1360 1393 1636 1602 1365 1261 1460 1273 1598 1125 942 3 6 17 4563 0 6066 4 1515 1865 1953 1715 1485 1397 1346 1193 1291 1501 1459 1353 1380 1512 1457 1442 1314 1454 1344 1370 1342 1453 1342 1427 1356 1329 1407 ]
G [ 1393 1477 1429 1463 1351 1404 1485 1381 1285 1337 1489 1494 1711 1672 1820 2164 3 5917 3 893 19 12 18 1507 1217 1458 1320 1320 1423 1267 1697 1496 1304 1281 1281 1650 1316 1384 1303 1392 1376 1414 1402 1422 1432 1513 1491 1390 1533 1408 ]
T [ 1903 1897 1774 1610 1884 2066 1904 1770 1877 1974 1676 1783 1773 1667 1781 133 6552 603 28 327 6468 41 10 3176 1737 1476 1851 2147 2003 1954 1761 1865 1807 1778 2117 1854 1892 1874 1910 1896 1881 1861 1950 1928 1809 1877 1768 1870 1833 1878 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 0.01 -0.01 -0.01 0.02 -0.01 -0.01 0.00 0.02 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 0.01 -0.01 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.01 0.02 -0.01 0.01 -0.01 -0.01 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 0.02 0.00 -0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4902

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1501

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 555

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 320

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 215

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 211

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 59

CWM

PFM

     

HCWM