Detailed information of deep learning profile BP001297.1

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This page shows detailed deep learning-derived predictions and motifs for BNC2 in SK-N-SH using a single trained BPNet model.

Model details

Name: BNC2
Model ID: BP001297.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA1928.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q6ZN30  
Source: ENCSR754GYI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.01 0.00 0.01 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1878 1833 1870 1768 1877 1809 1928 1950 1861 1881 1896 1910 1874 1892 1854 2117 1778 1807 1865 1761 1954 2003 2147 1851 1476 1737 3176 10 41 6468 327 28 603 6552 133 1781 1667 1773 1783 1676 1974 1877 1770 1904 2066 1884 1610 1774 1897 1903 ]
C [ 1408 1533 1390 1491 1513 1432 1422 1402 1414 1376 1392 1303 1384 1316 1650 1281 1281 1304 1496 1697 1267 1423 1320 1320 1458 1217 1507 18 12 19 893 3 5917 3 2164 1820 1672 1711 1494 1489 1337 1285 1381 1485 1404 1351 1463 1429 1477 1393 ]
G [ 1407 1329 1356 1427 1342 1453 1342 1370 1344 1454 1314 1442 1457 1512 1380 1353 1459 1501 1291 1193 1346 1397 1485 1715 1953 1865 1515 4 6066 0 4563 17 6 3 942 1125 1598 1273 1460 1261 1365 1602 1636 1393 1360 1360 1542 1436 1360 1379 ]
T [ 1871 1869 1948 1878 1832 1870 1872 1842 1945 1853 1962 1909 1849 1844 1680 1813 2046 1952 1912 1913 1997 1741 1612 1678 1677 1745 366 6532 445 77 781 6516 38 6 3325 1838 1627 1807 1827 2138 1888 1800 1777 1782 1734 1969 1949 1925 1830 1889 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 0.01 -0.01 -0.01 0.02 -0.01 -0.01 0.00 0.02 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 0.02 -0.01 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.01 0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 0.02 0.00 -0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4902

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1501

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 555

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 320

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 215

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 211

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 205

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 59

CWM

PFM

     

HCWM