Detailed information of deep learning profile BP001285.1

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This page shows detailed deep learning-derived predictions and motifs for E2F3 in K562 using a single trained BPNet model.

Model details

Name: E2F3
Model ID: BP001285.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: E2F
JASPAR ID: MA0469.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O35261  
Source: ENCSR036QIR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.01 0.02 -0.00 0.02 0.01 0.00 -0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 -0.00 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.01 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 312 316 303 325 284 346 345 300 321 293 318 321 314 315 307 308 319 296 285 352 353 318 276 271 323 364 215 87 31 10 11 5 1 3 5 615 447 313 313 227 258 314 286 264 318 295 318 275 314 316 ]
C [ 655 676 716 664 709 703 695 696 687 723 718 679 734 681 733 758 694 712 792 696 758 704 758 774 759 599 623 565 38 1810 1902 1923 5 1935 1649 611 554 713 582 754 751 655 696 680 691 691 725 656 702 706 ]
G [ 636 618 601 600 614 598 597 594 625 608 593 614 551 610 586 558 594 617 568 599 538 564 557 582 521 577 474 54 73 104 23 15 1915 9 27 258 410 508 558 552 587 554 581 630 609 583 553 653 591 608 ]
T [ 345 338 328 359 341 301 311 358 315 324 319 334 349 342 322 324 341 323 303 301 299 362 357 321 345 408 636 1242 1806 24 12 5 27 1 267 464 537 414 495 415 352 425 385 374 330 379 352 364 341 318 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.00 -0.01 0.01 0.01 0.02 -0.01 0.02 0.01 0.00 -0.00 0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.01 -0.00 -0.00 0.01 -0.00 0.02 -0.01 0.01 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.01 0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 863

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 136

CWM

PFM

     

HCWM