Detailed information of deep learning profile BP001285.1

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This page shows detailed deep learning-derived predictions and motifs for E2F3 in K562 using a single trained BPNet model.

Model details

Name: E2F3
Model ID: BP001285.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: E2F
JASPAR ID: MA0469.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O35261  
Source: ENCSR036QIR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.01 0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ -0.00 0.00 -0.00 0.00 0.01 0.02 -0.00 0.02 0.01 0.01 -0.00 0.00 -0.00 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 318 341 364 352 379 330 374 385 425 352 415 495 414 537 464 267 1 27 5 12 24 1806 1242 636 408 345 321 357 362 299 301 303 323 341 324 322 342 349 334 319 324 315 358 311 301 341 359 328 338 345 ]
C [ 608 591 653 553 583 609 630 581 554 587 552 558 508 410 258 27 9 1915 15 23 104 73 54 474 577 521 582 557 564 538 599 568 617 594 558 586 610 551 614 593 608 625 594 597 598 614 600 601 618 636 ]
G [ 706 702 656 725 691 691 680 696 655 751 754 582 713 554 611 1649 1935 5 1923 1902 1810 38 565 623 599 759 774 758 704 758 696 792 712 694 758 733 681 734 679 718 723 687 696 695 703 709 664 716 676 655 ]
T [ 316 314 275 318 295 318 264 286 314 258 227 313 313 447 615 5 3 1 5 11 10 31 87 215 364 323 271 276 318 353 352 285 296 319 308 307 315 314 321 318 293 321 300 345 346 284 325 303 316 312 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 0.01 0.01 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 -0.00 0.01 -0.01 0.02 -0.00 0.01 -0.00 -0.00 -0.01 0.00 0.00 0.00 0.00 ]
G [ -0.00 0.00 -0.00 0.00 0.01 0.02 -0.01 0.02 0.01 0.01 -0.01 0.00 -0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.02 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 863

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 136

CWM

PFM

     

HCWM