Detailed information of deep learning profile BP001284.1

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This page shows detailed deep learning-derived predictions and motifs for MTF1 in HepG2 using a single trained BPNet model.

Model details

Name: MTF1
Model ID: BP001284.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0863.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q14872  
Source: ENCSR194NVP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.02 -0.00 0.02 -0.00 0.02 -0.00 -0.00 0.01 0.00 0.01 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 0.02 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.01 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 34 41 50 44 54 39 40 67 41 61 37 56 38 54 47 36 57 51 50 21 42 12 3 2 0 210 3 166 6 26 32 12 47 25 51 49 51 56 55 45 32 49 37 49 48 44 60 59 46 68 ]
C [ 60 60 80 80 81 58 90 71 79 52 59 69 97 81 52 67 74 56 87 121 18 81 1 5 229 1 226 43 223 14 14 171 135 167 58 78 57 54 49 74 85 72 66 50 67 80 55 72 75 62 ]
G [ 70 93 53 70 41 51 47 50 40 57 84 66 43 55 60 76 54 89 55 42 27 40 0 220 1 20 4 8 0 179 176 14 26 14 45 51 46 50 47 52 57 56 69 64 60 56 62 54 54 55 ]
T [ 70 40 51 40 58 86 57 46 74 64 54 43 56 44 75 55 49 38 42 50 147 101 230 7 4 3 1 17 5 15 12 37 26 28 80 56 80 74 83 63 60 57 62 71 59 54 57 49 59 49 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 -0.01 -0.01 -0.01 0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.01 -0.00 -0.01 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.01 -0.00 -0.00 -0.01 0.02 -0.01 0.02 -0.00 0.02 -0.00 -0.01 0.01 0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.01 0.02 -0.01 0.01 -0.01 0.00 -0.01 0.02 0.02 -0.00 0.01 -0.00 0.01 0.00 0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.01 0.01 0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1360

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 306

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 245

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 156

CWM

PFM

     

HCWM