Detailed information of deep learning profile BP001267.1

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This page shows detailed deep learning-derived predictions and motifs for MEF2D in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MEF2D
Model ID: BP001267.1
Cell line/tissue: HepG2
Class: MADS box factors
Family: Regulators of differentiation
JASPAR ID: MA0773.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q05BX2  
Source: ENCSR923MOO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.04 0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.02 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.00 0.04 -0.00 0.03 0.01 0.03 0.02 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 264 237 267 257 247 264 301 269 291 279 256 273 293 228 256 249 273 230 302 107 23 6 998 73 129 60 238 63 796 122 394 353 248 260 243 285 260 272 264 293 284 260 251 242 246 261 256 273 283 280 ]
C [ 266 273 271 226 264 255 238 251 220 206 247 274 232 290 307 289 170 145 52 75 860 18 2 3 17 20 35 14 2 37 398 288 333 273 201 213 249 221 224 238 216 246 216 248 269 234 244 230 256 247 ]
G [ 228 232 231 267 255 257 217 207 234 263 256 234 203 264 209 194 304 389 303 465 17 1 5 0 15 6 25 39 221 770 87 98 176 201 301 282 241 239 242 238 252 217 257 236 235 254 260 256 224 211 ]
T [ 279 295 268 287 271 261 281 310 292 289 278 256 309 255 265 305 290 273 380 390 137 1012 32 961 876 951 739 921 18 108 158 298 280 303 292 257 287 305 307 268 285 314 313 311 287 288 277 278 274 299 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.01 -0.01 -0.02 0.04 0.01 0.01 -0.00 0.01 -0.01 0.03 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 ]
C [ 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.00 0.04 0.00 -0.02 -0.01 -0.01 -0.01 -0.02 -0.01 -0.02 0.00 0.02 0.02 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.02 0.02 -0.01 -0.02 -0.01 -0.03 0.01 -0.00 -0.01 -0.01 0.02 0.03 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.04 -0.01 0.04 0.01 0.03 0.03 0.04 -0.02 -0.01 -0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4649

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4015

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1007

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 749

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 725

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 653

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 295

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 45

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 21

CWM

PFM

     

HCWM

1 profiles found for the same TF (MEF2D) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001266.1 MEF2D ENCSR647ZXA K562 Homo sapiens MA0773.1
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