Detailed information of deep learning profile BP001249.1

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This page shows detailed deep learning-derived predictions and motifs for SPDEF in MCF-7 using a single trained BPNet model.

Model details

Name: SPDEF
Model ID: BP001249.1
Cell line/tissue: MCF-7
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0686.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O95238  
Source: ENCSR042GSX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.02 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.04 0.04 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.02 0.03 0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.03 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 931 944 957 865 906 936 879 893 870 857 986 1046 936 1039 877 690 1084 2905 340 2865 5 1 2 5 7 241 1322 696 800 963 961 901 933 930 883 942 962 873 944 920 914 893 900 932 1020 958 928 992 915 907 ]
C [ 1311 1322 1304 1289 1343 1206 1256 1312 1281 1378 1355 1158 1280 1257 1376 1687 1801 85 2140 71 6 4423 4422 3 171 957 341 1160 1648 1247 1235 1284 1162 1321 1335 1155 1210 1344 1278 1203 1248 1225 1243 1248 1216 1290 1327 1230 1264 1311 ]
G [ 1268 1235 1210 1310 1229 1313 1308 1313 1273 1231 1075 1284 1269 1289 1197 1218 660 1321 1357 264 0 1 0 2772 4140 2205 179 1065 1141 1394 1346 1277 1315 1351 1302 1228 1281 1305 1231 1333 1265 1319 1282 1283 1258 1261 1239 1188 1286 1268 ]
T [ 915 924 954 961 947 970 982 907 1001 959 1009 937 940 840 975 830 880 114 588 1225 4414 0 1 1645 107 1022 2583 1504 836 821 883 963 1015 823 905 1100 972 903 972 969 998 988 1000 962 931 916 931 1015 960 939 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.00 0.01 -0.01 0.02 -0.00 -0.01 -0.01 -0.02 -0.02 -0.00 0.01 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 -0.01 0.01 -0.02 -0.01 0.04 0.04 -0.02 0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.01 0.01 0.01 -0.00 -0.01 -0.01 -0.02 0.03 0.03 0.00 -0.01 0.00 0.01 0.01 0.00 ]
T [ 0.00 0.00 -0.00 0.00 -0.01 0.00 0.01 0.03 -0.03 -0.01 0.01 -0.01 0.00 0.01 0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5596

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1999

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1477

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 347

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 288

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 192

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 162

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 98

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 47

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 21

CWM

PFM

     

HCWM