Detailed information of deep learning profile BP001249.1

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This page shows detailed deep learning-derived predictions and motifs for SPDEF in MCF-7 using a single trained BPNet model.

Model details

Name: SPDEF
Model ID: BP001249.1
Cell line/tissue: MCF-7
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0686.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O95238  
Source: ENCSR042GSX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 0.03 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.03 0.02 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.04 0.04 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.01 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 939 960 1015 931 916 931 962 1000 988 998 969 972 903 972 1100 905 823 1015 963 883 821 836 1504 2583 1022 107 1645 1 0 4414 1225 588 114 880 830 975 840 940 937 1009 959 1001 907 982 970 947 961 954 924 915 ]
C [ 1268 1286 1188 1239 1261 1258 1283 1282 1319 1265 1333 1231 1305 1281 1228 1302 1351 1315 1277 1346 1394 1141 1065 179 2205 4140 2772 0 1 0 264 1357 1321 660 1218 1197 1289 1269 1284 1075 1231 1273 1313 1308 1313 1229 1310 1210 1235 1268 ]
G [ 1311 1264 1230 1327 1290 1216 1248 1243 1225 1248 1203 1278 1344 1210 1155 1335 1321 1162 1284 1235 1247 1648 1160 341 957 171 3 4422 4423 6 71 2140 85 1801 1687 1376 1257 1280 1158 1355 1378 1281 1312 1256 1206 1343 1289 1304 1322 1311 ]
T [ 907 915 992 928 958 1020 932 900 893 914 920 944 873 962 942 883 930 933 901 961 963 800 696 1322 241 7 5 2 1 5 2865 340 2905 1084 690 877 1039 936 1046 986 857 870 893 879 936 906 865 957 944 931 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 0.01 0.00 -0.01 0.01 -0.01 -0.03 0.03 0.01 0.00 -0.01 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 0.01 0.00 -0.01 0.00 0.03 0.03 -0.02 -0.01 -0.01 -0.00 0.01 0.01 -0.01 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 -0.02 0.04 0.04 -0.01 -0.02 0.01 -0.01 0.01 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.01 -0.00 -0.02 -0.02 -0.01 -0.01 -0.00 0.02 -0.01 0.01 0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5596

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1999

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1477

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 347

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 288

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 192

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 162

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 98

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 47

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 21

CWM

PFM

     

HCWM