Detailed information of deep learning profile BP001244.1

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This page shows detailed deep learning-derived predictions and motifs for ZSCAN4 in HEK293 using a single trained BPNet model.

Model details

Name: ZSCAN4
Model ID: BP001244.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1155.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8NAM6  
Source: ENCSR211GNP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.01 -0.00 0.00 -0.00 0.03 0.00 0.03 -0.00 0.05 0.00 0.04 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.02 0.00 0.00 -0.00 0.00 0.00 0.01 -0.00 0.03 -0.00 0.04 -0.00 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 403 338 409 362 401 347 410 315 407 317 421 302 432 311 388 313 339 50 128 270 558 829 13 86 151 4 2 2 3 2 1120 179 461 261 472 272 428 327 431 301 374 305 346 286 385 336 391 308 432 322 ]
C [ 350 406 344 350 341 374 284 384 277 366 313 388 292 371 316 347 328 126 93 426 731 127 3 84 25 8 0 1 0 1380 215 553 285 388 256 344 291 362 274 334 294 304 288 336 302 327 285 331 254 348 ]
G [ 690 406 667 416 676 398 712 437 730 454 723 440 678 450 720 317 670 72 1006 234 516 58 1790 291 1687 12 1870 0 1870 14 321 334 678 362 739 445 754 427 731 436 774 448 789 454 738 416 752 471 752 458 ]
T [ 434 727 457 749 459 758 471 741 463 740 420 747 475 745 452 900 540 1629 650 947 72 863 71 1416 14 1853 5 1874 4 481 221 811 453 866 410 816 404 761 440 806 435 820 454 801 452 798 449 767 439 749 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.01 0.01 0.00 0.02 -0.01 -0.01 0.01 -0.02 -0.00 -0.02 -0.00 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.01 0.00 0.01 0.00 -0.02 0.00 -0.02 0.01 -0.02 0.01 -0.02 0.03 -0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.01 0.01 -0.00 0.01 -0.01 0.03 0.00 0.04 -0.02 0.05 -0.02 0.04 -0.02 0.01 0.00 0.00 0.00 ]
T [ 0.00 0.01 0.01 0.01 0.02 0.01 0.01 -0.01 0.00 0.00 0.01 -0.01 0.03 -0.01 0.04 -0.01 0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 674

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 101

CWM

PFM

     

HCWM