Detailed information of deep learning profile BP001244.1

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This page shows detailed deep learning-derived predictions and motifs for ZSCAN4 in HEK293 using a single trained BPNet model.

Model details

Name: ZSCAN4
Model ID: BP001244.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1155.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8NAM6  
Source: ENCSR211GNP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.04 -0.00 0.03 -0.00 0.01 0.00 0.00 -0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.05 -0.00 0.03 0.00 0.03 -0.00 0.00 -0.00 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 749 439 767 449 798 452 801 454 820 435 806 440 761 404 816 410 866 453 811 221 481 4 1874 5 1853 14 1416 71 863 72 947 650 1629 540 900 452 745 475 747 420 740 463 741 471 758 459 749 457 727 434 ]
C [ 458 752 471 752 416 738 454 789 448 774 436 731 427 754 445 739 362 678 334 321 14 1870 0 1870 12 1687 291 1790 58 516 234 1006 72 670 317 720 450 678 440 723 454 730 437 712 398 676 416 667 406 690 ]
G [ 348 254 331 285 327 302 336 288 304 294 334 274 362 291 344 256 388 285 553 215 1380 0 1 0 8 25 84 3 127 731 426 93 126 328 347 316 371 292 388 313 366 277 384 284 374 341 350 344 406 350 ]
T [ 322 432 308 391 336 385 286 346 305 374 301 431 327 428 272 472 261 461 179 1120 2 3 2 2 4 151 86 13 829 558 270 128 50 339 313 388 311 432 302 421 317 407 315 410 347 401 362 409 338 403 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 0.02 -0.01 0.04 -0.01 0.03 -0.01 0.01 0.00 0.00 -0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.00 0.00 0.00 0.01 -0.02 0.04 -0.02 0.05 -0.02 0.04 0.00 0.03 -0.01 0.01 -0.00 0.01 -0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 -0.00 0.03 -0.02 0.01 -0.02 0.01 -0.02 0.00 -0.02 0.00 0.01 0.00 -0.01 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 -0.00 -0.02 -0.00 -0.02 0.01 -0.01 -0.01 0.02 0.00 0.01 -0.01 -0.00 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 674

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 101

CWM

PFM

     

HCWM