Detailed information of deep learning profile BP001230.1

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This page shows detailed deep learning-derived predictions and motifs for PITX1 in HepG2 using a single trained BPNet model.

Model details

Name: PITX1
Model ID: BP001230.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: Paired-related HD factors
JASPAR ID: MA0682.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P78337  
Source: ENCSR374MAS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.02 0.03 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.04 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 525 510 516 484 512 503 492 462 479 466 459 489 470 496 477 431 430 479 481 443 462 543 443 502 579 821 636 226 1 1964 0 12 2035 831 427 510 526 566 484 511 486 535 474 491 568 571 491 526 558 495 ]
C [ 536 519 517 527 526 478 522 556 491 497 506 504 551 566 474 571 518 507 446 464 435 544 630 613 553 280 140 6 0 59 0 8 0 197 767 485 519 480 442 488 506 484 537 516 523 521 523 484 476 514 ]
G [ 528 488 563 576 531 557 551 509 560 599 604 556 581 497 572 583 560 606 530 540 565 579 587 574 533 623 1111 1788 2053 10 0 2 1 825 511 565 601 520 619 584 608 598 555 563 523 503 561 555 557 558 ]
T [ 465 537 458 467 485 516 489 527 524 492 485 505 452 495 531 469 546 462 597 607 592 388 394 365 389 330 167 34 0 21 2054 2032 18 201 349 494 408 488 509 471 454 437 488 484 440 459 479 489 463 487 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.00 -0.01 -0.01 -0.00 0.00 -0.00 0.00 -0.01 0.02 -0.02 -0.01 0.03 0.01 -0.00 -0.01 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.02 -0.00 0.02 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.03 -0.01 -0.02 -0.03 -0.01 0.01 0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 0.04 0.03 -0.01 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5418

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1384

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1039

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 805

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 736

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 362

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 39

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 22

CWM

PFM

     

HCWM