Detailed information of deep learning profile BP001230.1

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This page shows detailed deep learning-derived predictions and motifs for PITX1 in HepG2 using a single trained BPNet model.

Model details

Name: PITX1
Model ID: BP001230.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: Paired-related HD factors
JASPAR ID: MA0682.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P78337  
Source: ENCSR374MAS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.04 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.03 0.02 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.03 0.00 0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 487 463 489 479 459 440 484 488 437 454 471 509 488 408 494 349 201 18 2032 2054 21 0 34 167 330 389 365 394 388 592 607 597 462 546 469 531 495 452 505 485 492 524 527 489 516 485 467 458 537 465 ]
C [ 558 557 555 561 503 523 563 555 598 608 584 619 520 601 565 511 825 1 2 0 10 2053 1788 1111 623 533 574 587 579 565 540 530 606 560 583 572 497 581 556 604 599 560 509 551 557 531 576 563 488 528 ]
G [ 514 476 484 523 521 523 516 537 484 506 488 442 480 519 485 767 197 0 8 0 59 0 6 140 280 553 613 630 544 435 464 446 507 518 571 474 566 551 504 506 497 491 556 522 478 526 527 517 519 536 ]
T [ 495 558 526 491 571 568 491 474 535 486 511 484 566 526 510 427 831 2035 12 0 1964 1 226 636 821 579 502 443 543 462 443 481 479 430 431 477 496 470 489 459 466 479 462 492 503 512 484 516 510 525 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.03 0.04 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.00 0.01 -0.01 -0.03 -0.02 -0.01 0.03 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.00 -0.00 0.01 -0.00 -0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.01 -0.00 0.01 0.03 -0.01 -0.02 0.02 -0.01 0.00 -0.00 0.00 -0.00 -0.01 -0.01 -0.00 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5418

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1384

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1039

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 805

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 766

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 736

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 362

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 39

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 22

CWM

PFM

     

HCWM