Detailed information of deep learning profile BP001211.1

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This page shows detailed deep learning-derived predictions and motifs for NFYC in HepG2 using a single trained BPNet model.

Model details

Name: NFYC
Model ID: BP001211.1
Cell line/tissue: HepG2
Class: Heteromeric CCAAT-binding factors
Family: Heteromeric CCAAT-binding
JASPAR ID: MA1644.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13952  
Source: ENCSR569ARC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.08 0.08 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 ]
C [ 0.00 0.01 -0.00 -0.00 0.08 0.06 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 2233 2438 2867 3328 4086 2820 1792 2040 2859 2628 1754 2414 3585 4404 4242 4535 1433 1619 4919 5544 6 30 12884 12913 15 1084 8071 1723 4942 4757 1874 1765 2401 2726 1636 2119 3732 2958 3176 2951 3575 2241 2479 2724 2934 2901 3731 3171 2780 2123 ]
C [ 3302 4756 3863 4772 3844 3263 3396 3302 4196 3474 4210 3770 3308 3172 3866 3573 4361 4704 2525 823 13138 13059 14 77 135 8387 1000 2466 4682 1047 4763 4317 5737 2451 3407 3648 2533 3103 3502 2943 2855 3260 3850 2999 4408 4757 3542 3183 3486 3950 ]
G [ 5058 3759 3609 3275 2815 4541 5220 4824 3039 3254 3371 3996 2982 4106 2749 2718 2567 3967 5146 5710 21 85 14 192 6 3259 4007 8280 2360 5220 4535 3950 3212 3778 6565 3416 4601 3603 4458 3943 4435 5567 4720 4235 3622 3312 3585 4669 4059 3631 ]
T [ 2622 2262 2876 1840 2470 2591 2807 3049 3121 3859 3880 3035 3340 1533 2358 2389 4854 2925 625 1138 50 41 303 33 13059 485 137 746 1231 2191 2043 3183 1865 4260 1607 4032 2349 3551 2079 3378 2350 2147 2166 3257 2251 2245 2357 2192 2890 3511 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 -0.00 -0.02 0.02 0.03 -0.04 -0.04 0.08 0.08 -0.03 0.00 0.04 0.01 0.01 0.01 0.01 ]
C [ 0.01 0.01 0.00 0.01 0.03 0.00 -0.01 0.08 0.06 -0.05 -0.03 0.01 0.03 -0.01 0.00 0.01 -0.01 0.01 ]
G [ 0.01 0.01 0.01 0.00 0.00 0.03 0.02 -0.03 -0.00 -0.02 -0.01 -0.06 0.00 0.04 0.02 0.00 0.02 0.01 ]
T [ 0.00 0.00 0.00 0.02 0.02 -0.02 -0.00 0.00 -0.01 0.01 -0.02 0.09 -0.01 -0.04 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 562

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 71

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 39

CWM

PFM

     

HCWM