Detailed information of deep learning profile BP001211.1

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This page shows detailed deep learning-derived predictions and motifs for NFYC in HepG2 using a single trained BPNet model.

Model details

Name: NFYC
Model ID: BP001211.1
Cell line/tissue: HepG2
Class: Heteromeric CCAAT-binding factors
Family: Heteromeric CCAAT-binding
JASPAR ID: MA1644.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13952  
Source: ENCSR569ARC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.06 0.08 -0.00 -0.00 0.01 0.00 ]
T [ 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 0.08 0.08 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3511 2890 2192 2357 2245 2251 3257 2166 2147 2350 3378 2079 3551 2349 4032 1607 4260 1865 3183 2043 2191 1231 746 137 485 13059 33 303 41 50 1138 625 2925 4854 2389 2358 1533 3340 3035 3880 3859 3121 3049 2807 2591 2470 1840 2876 2262 2622 ]
C [ 3631 4059 4669 3585 3312 3622 4235 4720 5567 4435 3943 4458 3603 4601 3416 6565 3778 3212 3950 4535 5220 2360 8280 4007 3259 6 192 14 85 21 5710 5146 3967 2567 2718 2749 4106 2982 3996 3371 3254 3039 4824 5220 4541 2815 3275 3609 3759 5058 ]
G [ 3950 3486 3183 3542 4757 4408 2999 3850 3260 2855 2943 3502 3103 2533 3648 3407 2451 5737 4317 4763 1047 4682 2466 1000 8387 135 77 14 13059 13138 823 2525 4704 4361 3573 3866 3172 3308 3770 4210 3474 4196 3302 3396 3263 3844 4772 3863 4756 3302 ]
T [ 2123 2780 3171 3731 2901 2934 2724 2479 2241 3575 2951 3176 2958 3732 2119 1636 2726 2401 1765 1874 4757 4942 1723 8071 1084 15 12913 12884 30 6 5544 4919 1619 1433 4535 4242 4404 3585 2414 1754 2628 2859 2040 1792 2820 4086 3328 2867 2438 2233 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.04 -0.01 0.09 -0.02 0.01 -0.01 0.00 -0.00 -0.02 0.02 0.02 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.00 0.02 0.04 0.00 -0.06 -0.01 -0.02 -0.00 -0.03 0.02 0.03 0.00 0.00 0.01 0.01 0.01 ]
G [ 0.01 -0.01 0.01 0.00 -0.01 0.03 0.01 -0.03 -0.05 0.06 0.08 -0.01 0.00 0.03 0.01 0.00 0.01 0.01 ]
T [ 0.01 0.01 0.01 0.01 0.04 0.00 -0.03 0.08 0.08 -0.04 -0.04 0.03 0.02 -0.02 -0.00 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 562

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 96

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 71

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 39

CWM

PFM

     

HCWM