Detailed information of deep learning profile BP001210.1

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This page shows detailed deep learning-derived predictions and motifs for HMBOX1 in K562 using a single trained BPNet model.

Model details

Name: HMBOX1
Model ID: BP001210.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: POU domain factors
JASPAR ID: MA0895.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q6NT76  
Source: ENCSR757IIU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 0.04 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.05 0.01 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.02 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 -0.00 -0.00 0.01 0.04 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 2242 2161 2288 2206 2226 2225 2147 2052 2091 2080 2074 2136 2290 2318 2262 2428 2557 1947 2762 755 1901 158 7125 7863 79 311 5323 1876 1832 2160 2167 2182 2072 2134 2253 2170 2145 2117 2197 2175 2084 2179 2196 2187 2178 2127 2195 2297 2158 2175 ]
C [ 1758 1802 1720 1858 1795 1891 1857 1832 1783 1716 1708 1735 1640 1743 1871 1850 1797 2300 1126 1337 1226 53 51 0 7678 5008 644 1559 1909 1825 2203 1920 1885 2085 2016 2055 1960 1852 1791 1861 1883 1864 1764 1807 1906 1886 1842 1768 1863 1806 ]
G [ 1728 1825 1788 1810 1802 1710 1764 1840 1827 1958 1930 1755 1824 1691 1636 1470 1716 1679 1590 4925 1037 9 222 13 49 93 748 3611 1859 1331 1615 1605 1667 1528 1488 1605 1662 1780 1749 1714 1770 1721 1905 1738 1678 1649 1732 1679 1705 1815 ]
T [ 2179 2119 2111 2033 2084 2081 2139 2183 2206 2153 2195 2281 2153 2155 2138 2159 1837 1981 2429 890 3743 7687 509 31 101 2495 1192 861 2307 2591 1922 2200 2283 2160 2150 2077 2140 2158 2170 2157 2170 2143 2042 2175 2145 2245 2138 2163 2181 2111 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 0.00 -0.01 -0.01 -0.02 0.03 0.04 -0.02 -0.03 0.02 0.00 -0.01 -0.01 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 0.00 0.00 0.00 -0.00 -0.03 -0.03 0.05 0.02 -0.00 0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.03 -0.01 -0.03 -0.01 -0.00 -0.01 -0.01 0.00 0.02 0.00 -0.00 0.01 0.01 ]
T [ -0.00 -0.01 -0.00 -0.01 -0.02 0.01 0.04 -0.01 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 9231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 6578

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 4538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 3443

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 111

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 102

CWM

PFM

     

HCWM