Detailed information of deep learning profile BP001199.1

  1. Home
  2. Deep Learning Profile > BP001199.1
This page shows detailed deep learning-derived predictions and motifs for TFAP2B in SK-N-SH using a single trained BPNet model.

Model details

Name: TFAP2B
Model ID: BP001199.1
Cell line/tissue: SK-N-SH
Class: Basic helix-span-helix factors (bHSH)
Family: AP-2
JASPAR ID: MA0811.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q92481  
Source: ENCSR630GGD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.00 0.04 0.12 0.08 0.01 0.01 0.00 0.00 -0.00 0.04 0.01 -0.00 0.00 -0.00 ]
G [ -0.00 -0.00 0.00 0.02 0.01 0.00 0.00 0.00 0.01 0.01 0.10 0.12 0.01 0.00 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 6030 5790 5955 5838 6142 6081 6054 5885 5999 6131 5949 5781 6111 5712 6274 6141 7495 6133 8758 4128 3697 366 1 48 1194 2263 15303 1235 1 667 8325 10218 5086 6831 5566 5576 5386 5877 5969 6071 6003 5780 5855 5876 5965 5931 5959 5998 6073 6188 ]
C [ 6054 5982 6185 6209 6255 6298 6234 6013 6038 6055 6321 6615 6257 6608 6606 6417 5938 5951 4916 3561 3258 16391 23928 19553 6639 9463 1264 1 1 18365 5467 4084 4943 4259 5125 5864 6069 5629 5637 5588 5968 5999 5965 5922 5890 5872 5868 5772 5804 5838 ]
G [ 5845 5820 5731 5802 5608 5757 5675 5959 6031 5962 5729 5518 5575 5739 5707 5314 4896 4143 5042 3443 13928 6594 1 1 2475 10013 6512 22711 23945 4578 3524 5381 4355 6164 5602 6130 6360 6280 6194 6098 5864 5984 5969 6049 5859 6027 6065 5920 6069 5840 ]
T [ 6018 6355 6076 6098 5942 5811 5984 6090 5879 5799 5948 6033 6004 5888 5360 6075 5618 7720 5231 12815 3064 596 17 4345 13639 2208 868 0 0 337 6631 4264 9563 6693 7654 6377 6132 6161 6147 6190 6112 6184 6158 6100 6233 6117 6055 6257 6001 6081 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.01 -0.01 -0.04 -0.07 -0.10 -0.05 -0.01 0.02 0.03 -0.03 -0.03 -0.00 0.02 0.00 0.01 ]
C [ 0.00 -0.00 0.01 0.01 0.06 0.12 0.09 0.03 0.03 0.01 -0.05 -0.04 0.05 0.01 -0.00 0.00 -0.00 ]
G [ -0.00 0.00 -0.01 0.03 0.03 -0.05 -0.04 0.02 0.03 0.04 0.11 0.12 0.04 0.02 0.01 -0.00 0.00 ]
T [ 0.01 0.00 0.02 -0.01 -0.03 -0.02 0.03 0.02 -0.02 -0.05 -0.10 -0.07 -0.03 -0.00 -0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4093

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2558

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2132

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1981

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 493

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 342

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 70

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 43

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 32

CWM

PFM

     

HCWM