Detailed information of deep learning profile BP001192.1

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This page shows detailed deep learning-derived predictions and motifs for NR5A1 in HepG2 using a single trained BPNet model.

Model details

Name: NR5A1
Model ID: BP001192.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: FTZF1related(NR5A)
JASPAR ID: MA1540.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13285  
Source: ENCSR310OZS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 0.09 0.06 0.00 0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.08 0.00 -0.00 -0.00 0.00 0.00 0.05 -0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.03 0.01 -0.00 -0.00 0.00 -0.00 0.09 0.11 -0.00 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.03 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3372 3763 5273 3475 3346 4632 3307 3131 2947 3155 5808 3786 2913 2683 3068 5668 3902 3710 7064 1466 917 433 84 14458 13731 16 1 1562 135 10372 2219 5899 2307 3608 2720 4834 3021 3544 3720 4818 3531 4159 4889 3167 3046 3642 3069 4771 3549 3881 ]
C [ 3227 2882 2784 2919 4203 2995 4819 3066 2853 2646 2650 2490 4134 4874 5512 3810 3400 2330 1456 1150 3284 4127 13908 3 48 4 0 4975 11400 469 6301 3331 4022 2718 2995 3595 3273 4850 3253 2817 3458 2739 2856 2954 3505 3079 4502 3043 4464 4659 ]
G [ 4997 5156 3753 3284 3557 4161 3539 3666 3235 5465 3467 5653 4646 3128 3035 2699 4735 5538 2935 9758 4973 312 471 37 568 14470 14493 368 92 2803 3177 2717 5433 2982 6288 3225 4930 3185 3674 3590 3130 5007 3555 3564 4082 4613 3579 4051 3579 3200 ]
T [ 2905 2700 2691 4823 3395 2713 2836 4638 5466 3235 2576 2572 2808 3816 2886 2324 2464 2923 3046 2127 5327 9629 38 3 154 11 7 7596 2874 857 2804 2554 2739 5193 2498 2847 3277 2922 3854 3276 4382 2596 3201 4816 3868 3167 3351 2636 2909 2761 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.02 -0.01 -0.01 -0.02 -0.03 0.09 0.06 -0.04 -0.03 0.00 -0.03 0.04 0.01 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.01 -0.00 0.03 0.08 -0.05 -0.02 -0.01 -0.04 0.02 0.07 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.04 0.03 -0.02 0.00 0.00 -0.00 0.09 0.11 -0.03 -0.04 0.03 0.00 0.01 0.01 0.01 ]
T [ 0.00 -0.00 -0.02 -0.00 0.02 0.05 -0.02 -0.05 -0.02 -0.03 -0.02 0.04 0.02 -0.02 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4632

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3370

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2771

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 950

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 41

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 20

CWM

PFM

     

HCWM