Detailed information of deep learning profile BP001192.1

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This page shows detailed deep learning-derived predictions and motifs for NR5A1 in HepG2 using a single trained BPNet model.

Model details

Name: NR5A1
Model ID: BP001192.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: FTZF1related(NR5A)
JASPAR ID: MA1540.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13285  
Source: ENCSR310OZS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.01 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.11 0.09 -0.00 0.00 -0.00 -0.00 0.01 0.03 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.05 0.00 0.00 -0.00 -0.00 0.00 0.08 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 0.06 0.09 0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 2761 2909 2636 3351 3167 3868 4816 3201 2596 4382 3276 3854 2922 3277 2847 2498 5193 2739 2554 2804 857 2874 7596 7 11 154 3 38 9629 5327 2127 3046 2923 2464 2324 2886 3816 2808 2572 2576 3235 5466 4638 2836 2713 3395 4823 2691 2700 2905 ]
C [ 3200 3579 4051 3579 4613 4082 3564 3555 5007 3130 3590 3674 3185 4930 3225 6288 2982 5433 2717 3177 2803 92 368 14493 14470 568 37 471 312 4973 9758 2935 5538 4735 2699 3035 3128 4646 5653 3467 5465 3235 3666 3539 4161 3557 3284 3753 5156 4997 ]
G [ 4659 4464 3043 4502 3079 3505 2954 2856 2739 3458 2817 3253 4850 3273 3595 2995 2718 4022 3331 6301 469 11400 4975 0 4 48 3 13908 4127 3284 1150 1456 2330 3400 3810 5512 4874 4134 2490 2650 2646 2853 3066 4819 2995 4203 2919 2784 2882 3227 ]
T [ 3881 3549 4771 3069 3642 3046 3167 4889 4159 3531 4818 3720 3544 3021 4834 2720 3608 2307 5899 2219 10372 135 1562 1 16 13731 14458 84 433 917 1466 7064 3710 3902 5668 3068 2683 2913 3786 5808 3155 2947 3131 3307 4632 3346 3475 5273 3763 3372 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 -0.02 0.02 0.04 -0.02 -0.03 -0.02 -0.05 -0.02 0.05 0.02 -0.00 -0.02 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.00 0.03 -0.04 -0.03 0.11 0.09 -0.00 0.00 0.00 -0.02 0.03 0.04 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.07 0.02 -0.04 -0.01 -0.02 -0.05 0.08 0.03 -0.00 -0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.01 0.04 -0.03 0.00 -0.03 -0.04 0.06 0.09 -0.03 -0.02 -0.01 -0.01 0.02 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4632

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3370

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2771

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 950

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 41

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 20

CWM

PFM

     

HCWM