Detailed information of deep learning profile BP001191.1

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This page shows detailed deep learning-derived predictions and motifs for PAX8 in GM12878 using a single trained BPNet model.

Model details

Name: PAX8
Model ID: BP001191.1
Cell line/tissue: GM12878
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA2094.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06710  
Source: ENCSR192AFN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ -0.00 -0.00 0.00 -0.00 0.01 -0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 -0.00 0.01 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 91 95 85 100 87 100 119 107 108 91 93 102 93 86 110 96 121 88 12 25 284 87 11 46 255 174 13 0 150 21 22 254 37 76 78 85 74 71 84 81 74 105 116 89 115 109 117 101 101 114 ]
C [ 84 86 97 81 64 80 76 78 64 100 101 80 81 95 65 30 23 72 64 242 10 81 77 155 5 27 93 319 5 10 8 15 269 93 61 112 85 90 105 85 113 98 75 81 67 80 64 79 75 69 ]
G [ 72 74 66 65 94 81 65 69 61 71 69 76 87 78 108 90 177 92 127 9 33 125 10 128 73 54 226 3 167 11 301 37 16 74 138 58 93 71 62 55 77 64 67 70 93 60 74 78 69 69 ]
T [ 90 82 89 91 92 76 77 83 104 75 74 79 76 78 54 121 16 85 134 61 10 44 239 8 4 82 5 15 15 295 6 31 15 94 60 82 85 105 86 116 73 70 79 97 62 88 82 79 92 85 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.01 0.00 -0.01 -0.01 0.01 0.00 -0.01 -0.01 0.01 0.00 -0.00 -0.01 0.01 -0.01 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 ]
C [ -0.00 0.00 -0.00 -0.00 -0.01 0.00 -0.00 0.01 -0.01 0.00 0.00 0.01 -0.01 0.00 0.00 0.03 -0.02 0.00 -0.01 -0.01 0.01 0.01 -0.01 0.00 0.00 0.00 -0.00 ]
G [ 0.00 -0.00 0.00 -0.00 0.01 -0.00 0.00 -0.01 0.01 0.00 -0.00 0.00 0.01 -0.01 0.02 -0.01 0.02 -0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 ]
T [ 0.00 0.00 -0.00 0.00 -0.01 0.00 0.01 0.01 -0.01 -0.00 0.01 -0.00 -0.01 0.00 -0.01 -0.00 -0.01 0.01 -0.01 -0.00 -0.01 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 51

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 34

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 33

CWM

PFM

     

HCWM