Detailed information of deep learning profile BP001191.1

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This page shows detailed deep learning-derived predictions and motifs for PAX8 in GM12878 using a single trained BPNet model.

Model details

Name: PAX8
Model ID: BP001191.1
Cell line/tissue: GM12878
Class: Paired box factors
Family: Paired domain only
JASPAR ID: MA2094.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06710  
Source: ENCSR192AFN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.01 -0.00 0.01 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 -0.00 0.01 0.00 0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 85 92 79 82 88 62 97 79 70 73 116 86 105 85 82 60 94 15 31 6 295 15 15 5 82 4 8 239 44 10 61 134 85 16 121 54 78 76 79 74 75 104 83 77 76 92 91 89 82 90 ]
C [ 69 69 78 74 60 93 70 67 64 77 55 62 71 93 58 138 74 16 37 301 11 167 3 226 54 73 128 10 125 33 9 127 92 177 90 108 78 87 76 69 71 61 69 65 81 94 65 66 74 72 ]
G [ 69 75 79 64 80 67 81 75 98 113 85 105 90 85 112 61 93 269 15 8 10 5 319 93 27 5 155 77 81 10 242 64 72 23 30 65 95 81 80 101 100 64 78 76 80 64 81 97 86 84 ]
T [ 114 101 101 117 109 115 89 116 105 74 81 84 71 74 85 78 76 37 254 22 21 150 0 13 174 255 46 11 87 284 25 12 88 121 96 110 86 93 102 93 91 108 107 119 100 87 100 85 95 91 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.01 0.01 -0.01 -0.00 -0.01 0.00 -0.01 -0.00 0.01 -0.00 -0.01 0.01 0.01 0.00 -0.01 0.00 -0.00 0.00 0.00 ]
C [ -0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 -0.01 0.02 -0.01 0.02 -0.01 0.01 0.00 -0.00 0.00 0.01 -0.01 0.00 -0.00 0.01 -0.00 0.00 -0.00 0.00 ]
G [ -0.00 0.00 0.00 0.00 -0.01 0.01 0.01 -0.01 -0.01 0.00 -0.02 0.03 0.00 0.00 -0.01 0.01 0.00 0.00 -0.01 0.01 -0.00 0.00 -0.01 -0.00 -0.00 0.00 -0.00 ]
T [ 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.01 0.01 -0.01 -0.00 0.00 0.01 -0.01 -0.01 0.00 0.01 -0.01 -0.01 0.00 0.01 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 100

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 51

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 34

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 33

CWM

PFM

     

HCWM