Detailed information of deep learning profile BP001165.1

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This page shows detailed deep learning-derived predictions and motifs for TCF4 in SK-N-SH using a single trained BPNet model.

Model details

Name: TCF4
Model ID: BP001165.1
Cell line/tissue: SK-N-SH
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA0830.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P15884  
Source: ENCSR922RFY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 -0.00 0.04 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 -0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 0.00 0.00 0.00 -0.00 0.00 0.06 0.02 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.03 -0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1357 1351 1372 1377 1390 1383 1336 1359 1366 1344 1341 1475 1408 1436 1481 1413 1330 1343 1816 50 4993 0 248 3 0 6 975 1332 1238 947 1043 1743 893 1450 1367 1280 1424 1286 1269 1274 1331 1365 1369 1406 1407 1404 1386 1390 1354 1387 ]
C [ 1147 1170 1186 1154 1231 1191 1205 1249 1243 1285 1290 1241 1197 1198 1168 1165 881 767 2226 4953 10 25 4552 0 0 617 1412 1092 1100 1756 1784 882 897 1297 1311 1166 1113 1179 1238 1197 1224 1209 1101 1139 1129 1108 1167 1109 1148 1148 ]
G [ 1177 1123 1152 1124 1120 1196 1227 1133 1101 1120 1006 1066 1120 1276 1379 1391 1753 2500 909 34 59 392 272 0 5074 3292 533 900 1036 1014 817 1268 1571 1159 911 1312 1188 1259 1154 1169 1161 1115 1164 1140 1097 1200 1141 1171 1139 1154 ]
T [ 1393 1430 1364 1419 1333 1304 1306 1333 1364 1325 1437 1292 1349 1164 1046 1105 1110 464 123 37 12 4657 2 5071 0 1159 2154 1750 1700 1357 1430 1181 1713 1168 1485 1316 1349 1350 1413 1434 1358 1385 1440 1389 1441 1362 1380 1404 1433 1385 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.04 -0.04 0.01 -0.02 -0.03 -0.03 -0.00 0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.00 0.01 0.04 -0.03 -0.01 0.03 -0.00 -0.01 0.01 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.01 -0.01 0.01 0.02 0.00 -0.03 0.06 0.02 -0.00 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.01 -0.02 -0.03 0.03 -0.03 0.04 -0.00 0.01 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2995

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 2750

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 433

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 90

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 47

CWM

PFM

     

HCWM