Detailed information of deep learning profile BP001165.1

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This page shows detailed deep learning-derived predictions and motifs for TCF4 in SK-N-SH using a single trained BPNet model.

Model details

Name: TCF4
Model ID: BP001165.1
Cell line/tissue: SK-N-SH
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA0830.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P15884  
Source: ENCSR922RFY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.00 0.00 0.04 -0.00 0.03 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.02 0.06 0.00 -0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 -0.00 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.04 -0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1385 1433 1404 1380 1362 1441 1389 1440 1385 1358 1434 1413 1350 1349 1316 1485 1168 1713 1181 1430 1357 1700 1750 2154 1159 0 5071 2 4657 12 37 123 464 1110 1105 1046 1164 1349 1292 1437 1325 1364 1333 1306 1304 1333 1419 1364 1430 1393 ]
C [ 1154 1139 1171 1141 1200 1097 1140 1164 1115 1161 1169 1154 1259 1188 1312 911 1159 1571 1268 817 1014 1036 900 533 3292 5074 0 272 392 59 34 909 2500 1753 1391 1379 1276 1120 1066 1006 1120 1101 1133 1227 1196 1120 1124 1152 1123 1177 ]
G [ 1148 1148 1109 1167 1108 1129 1139 1101 1209 1224 1197 1238 1179 1113 1166 1311 1297 897 882 1784 1756 1100 1092 1412 617 0 0 4552 25 10 4953 2226 767 881 1165 1168 1198 1197 1241 1290 1285 1243 1249 1205 1191 1231 1154 1186 1170 1147 ]
T [ 1387 1354 1390 1386 1404 1407 1406 1369 1365 1331 1274 1269 1286 1424 1280 1367 1450 893 1743 1043 947 1238 1332 975 6 0 3 248 0 4993 50 1816 1343 1330 1413 1481 1436 1408 1475 1341 1344 1366 1359 1336 1383 1390 1377 1372 1351 1357 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.01 0.01 -0.00 0.04 -0.03 0.03 -0.03 -0.02 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.02 0.06 -0.03 0.00 0.02 0.01 -0.01 0.01 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.01 -0.01 -0.00 0.03 -0.01 -0.03 0.04 0.01 0.00 0.01 0.01 0.01 ]
T [ -0.00 0.00 0.00 -0.00 -0.03 -0.03 -0.02 0.01 -0.04 0.04 -0.00 0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3184

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2995

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 2750

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 433

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 109

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 90

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 47

CWM

PFM

     

HCWM