Detailed information of deep learning profile BP001143.1

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This page shows detailed deep learning-derived predictions and motifs for SCRT1 in HEK293 using a single trained BPNet model.

Model details

Name: SCRT1
Model ID: BP001143.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0743.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9BWW7  
Source: ENCSR605MGM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 0.00 0.01 -0.00 0.06 0.03 -0.00 0.00 0.00 -0.00 -0.00 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.09 -0.00 -0.00 0.04 -0.00 0.00 -0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 5747 4811 4787 4866 5440 4943 5055 5138 5572 5011 5011 4542 4481 4765 4543 4406 6667 5742 5719 3733 19556 497 311 259 2 291 2565 1812 6761 5973 3167 4455 5513 4421 4613 5164 5646 4825 4890 4644 5027 5080 4819 6210 4974 4834 4706 4605 4820 6155 ]
C [ 4884 5472 6401 5841 5128 5161 5380 6012 4966 5320 5252 5659 5975 5314 5096 7089 3807 6009 8167 13107 333 20174 17322 6 0 843 985 537 9679 5045 6608 6529 4963 4908 6480 4526 5150 5722 4822 5513 4849 4771 4794 4979 4950 4664 6078 5190 5272 4957 ]
G [ 5050 5713 4619 4995 5241 5748 6016 4908 5294 4802 5268 5814 4602 5975 6246 4690 5377 5699 4078 1848 1060 225 126 56 21279 24 3641 18119 2637 2515 3971 5032 4875 6931 4465 4893 5343 4541 4493 4752 5778 5666 5840 4450 5687 5993 4836 4906 5796 4764 ]
T [ 5601 5286 5475 5580 5473 5430 4831 5224 5450 6149 5751 5267 6224 5228 5397 5097 5431 3832 3318 2594 333 386 3523 20961 1 20124 14091 814 2205 7749 7536 5266 5931 5022 5724 6699 5143 6194 7077 6373 5628 5765 5829 5643 5671 5791 5662 6581 5394 5406 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.01 0.06 -0.00 -0.02 0.00 -0.01 -0.01 -0.01 0.01 0.01 0.01 -0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 0.02 0.02 -0.03 0.06 0.04 -0.04 -0.03 -0.00 0.00 -0.02 0.02 -0.00 0.01 0.00 0.00 ]
G [ 0.00 0.01 0.00 -0.00 0.01 -0.02 -0.01 -0.00 0.09 -0.04 -0.01 0.05 -0.01 0.00 -0.00 0.01 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 -0.02 -0.01 0.02 0.05 -0.02 0.06 0.03 -0.02 -0.01 0.01 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 320

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 279

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 271

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 33

CWM

PFM

     

HCWM