Detailed information of deep learning profile BP001142.1

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This page shows detailed deep learning-derived predictions and motifs for PBX1 in A549 using a single trained BPNet model.

Model details

Name: PBX1
Model ID: BP001142.1
Cell line/tissue: A549
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0070.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40424  
Source: ENCSR637RKG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.02 -0.00 -0.00 0.02 0.02 0.00 0.00 0.02 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1050 1025 1064 1094 1040 1046 1112 994 1038 1023 1002 1061 1039 1063 1086 1099 1091 1358 1084 1216 1871 477 138 3904 141 316 1079 3894 35 568 1139 633 884 875 970 952 954 1118 1112 1059 991 1072 1131 1133 1095 1062 1087 1071 1043 1068 ]
C [ 924 865 915 819 836 875 810 860 862 924 822 873 958 873 833 938 1003 717 847 670 431 30 26 11 306 59 240 4 126 263 333 1503 1063 888 790 820 885 792 738 791 869 943 850 852 826 885 864 880 866 879 ]
G [ 878 924 919 913 978 899 884 982 916 945 958 950 836 817 1018 747 1028 963 1106 1117 906 116 3694 9 319 404 888 31 61 2070 1705 954 671 846 860 1014 940 896 989 914 939 869 864 861 871 911 901 944 924 904 ]
T [ 1082 1120 1036 1108 1080 1114 1128 1098 1118 1042 1152 1050 1101 1181 997 1150 812 896 897 931 726 3311 76 10 3168 3155 1727 5 3712 1033 757 844 1316 1325 1314 1148 1155 1128 1095 1170 1135 1050 1089 1088 1142 1076 1082 1039 1101 1083 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.01 -0.00 0.00 0.03 -0.01 -0.01 0.00 0.03 -0.02 -0.00 0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.02 -0.01 0.00 -0.01 -0.01 -0.02 0.01 -0.00 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.00 -0.01 0.03 -0.01 -0.00 -0.00 0.01 0.00 -0.01 0.01 0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.00 0.02 -0.01 -0.01 0.02 0.02 0.00 -0.02 0.02 0.00 -0.00 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4543

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3649

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2613

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 47

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 46

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 28

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 25

CWM

PFM

     

HCWM