Detailed information of deep learning profile BP001142.1

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This page shows detailed deep learning-derived predictions and motifs for PBX1 in A549 using a single trained BPNet model.

Model details

Name: PBX1
Model ID: BP001142.1
Cell line/tissue: A549
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA0070.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40424  
Source: ENCSR637RKG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 0.02 0.02 -0.00 -0.00 0.02 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.03 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1083 1101 1039 1082 1076 1142 1088 1089 1050 1135 1170 1095 1128 1155 1148 1314 1325 1316 844 757 1033 3712 5 1727 3155 3168 10 76 3311 726 931 897 896 812 1150 997 1181 1101 1050 1152 1042 1118 1098 1128 1114 1080 1108 1036 1120 1082 ]
C [ 904 924 944 901 911 871 861 864 869 939 914 989 896 940 1014 860 846 671 954 1705 2070 61 31 888 404 319 9 3694 116 906 1117 1106 963 1028 747 1018 817 836 950 958 945 916 982 884 899 978 913 919 924 878 ]
G [ 879 866 880 864 885 826 852 850 943 869 791 738 792 885 820 790 888 1063 1503 333 263 126 4 240 59 306 11 26 30 431 670 847 717 1003 938 833 873 958 873 822 924 862 860 810 875 836 819 915 865 924 ]
T [ 1068 1043 1071 1087 1062 1095 1133 1131 1072 991 1059 1112 1118 954 952 970 875 884 633 1139 568 35 3894 1079 316 141 3904 138 477 1871 1216 1084 1358 1091 1099 1086 1063 1039 1061 1002 1023 1038 994 1112 1046 1040 1094 1064 1025 1050 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.02 -0.02 0.00 0.02 0.02 -0.01 -0.01 0.02 0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 0.01 -0.01 0.00 0.01 -0.00 -0.00 -0.01 0.03 -0.01 0.00 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.00 -0.00 0.01 -0.02 -0.01 -0.01 0.00 -0.01 -0.02 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.02 0.03 0.00 -0.01 -0.01 0.03 0.00 -0.00 0.01 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4543

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3649

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2613

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 48

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 47

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 46

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 28

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 25

CWM

PFM

     

HCWM