Detailed information of deep learning profile BP000928.1

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This page shows detailed deep learning-derived predictions and motifs for NR2C1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C1
Model ID: BP000928.1
Cell line/tissue: K562
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1535.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P13056  
Source: ENCSR178DEG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.00 0.00 0.02 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.02 0.02 0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1640 1967 1621 1771 1875 1619 1772 1712 1598 1695 1765 1557 1645 2011 1776 1590 1460 1006 1368 1 111 7851 63 37 14 483 1762 1705 2098 1554 1678 1934 1523 1758 1470 1717 1608 1575 1533 1826 1607 1765 1621 1658 1793 1838 1736 1927 1879 1708 ]
C [ 2417 2184 2234 2141 2329 2229 2218 2025 2192 2239 2088 2151 2295 2022 2437 3004 3023 2863 2536 172 8 16 7804 7763 2739 3941 1180 1832 2075 1946 2335 2021 2412 2616 2686 2408 2741 2410 2461 2086 2389 2465 2195 2298 2114 2040 2396 2352 2077 2393 ]
G [ 1895 1893 2138 2266 1916 2046 2162 2187 2000 2124 1851 1949 2095 1923 1859 1711 1405 1593 2040 7 7745 8 1 39 20 616 2049 2835 2384 1982 2098 1895 1896 1631 1818 1892 1732 1942 2006 1963 2137 1863 1855 1853 2099 2231 1903 1777 1886 1925 ]
T [ 1927 1835 1886 1701 1759 1985 1727 1955 2089 1821 2175 2222 1844 1923 1807 1574 1991 2417 1935 7699 15 4 11 40 5106 2839 2888 1507 1322 2397 1768 2029 2048 1874 1905 1862 1798 1952 1879 2004 1746 1786 2208 2070 1873 1770 1844 1823 2037 1853 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 0.00 -0.02 0.00 0.02 0.01 -0.01 -0.02 -0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.01 -0.01 -0.00 0.02 0.02 0.01 0.01 -0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.01 0.02 -0.01 -0.02 -0.01 -0.01 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.02 -0.01 -0.01 -0.01 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4802

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3906

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1614

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1460

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 891

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 196

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 108

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 41

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 28

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 21

CWM

PFM

     

HCWM

1 profiles found for the same TF (NR2C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000929.1 NR2C1 ENCSR742IDN K562 Homo sapiens MA1535.2
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