Detailed information of deep learning profile BP000899.1

  1. Home
  2. Deep Learning Profile > BP000899.1
This page shows detailed deep learning-derived predictions and motifs for TCF3 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF3
Model ID: BP000899.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA0522.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17542  
Source: ENCSR000BQT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.00 0.04 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 0.07 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.04 0.01 0.00 0.07 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.01 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1610 1510 1598 1561 1582 1616 1589 1591 1498 1772 1575 1503 1661 1552 1591 1897 1834 1260 2473 1884 2 6681 2 351 3 0 44 1036 1424 1203 1184 1512 1334 1260 1342 1603 1419 1495 1379 1501 1403 1493 1530 1630 1589 1529 1565 1537 1494 1568 ]
C [ 1733 1758 1729 1811 1794 1844 1817 1757 1907 1799 1740 1903 1660 1867 1979 1787 1685 2611 1385 2370 6692 1 5 3108 3 0 1757 1800 1734 1952 2053 1649 1735 1889 1898 1796 1803 1705 1911 1771 1685 1759 1748 1752 1754 1768 1820 1850 1852 1736 ]
G [ 1778 1869 1841 1836 1794 1821 1823 1852 1782 1766 1884 1871 1985 1849 1698 1949 2104 1555 1895 2394 2 6 6686 3230 6 6693 2002 1748 1628 1909 1768 1899 2209 1761 2016 1828 1879 1960 1872 1886 1889 1939 1837 1842 1791 1782 1732 1773 1776 1779 ]
T [ 1575 1559 1528 1488 1526 1415 1467 1496 1509 1359 1497 1419 1390 1428 1428 1063 1073 1270 943 48 0 8 3 7 6684 3 2893 2112 1910 1632 1691 1636 1418 1786 1440 1469 1595 1536 1534 1538 1719 1505 1581 1472 1562 1617 1579 1536 1574 1613 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.01 0.01 0.01 -0.02 0.04 -0.03 -0.01 -0.03 -0.02 -0.03 -0.01 -0.00 -0.01 -0.01 ]
C [ 0.01 0.01 0.02 0.01 0.01 0.07 -0.02 0.02 0.04 0.01 -0.03 0.02 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.02 -0.03 0.00 0.04 0.02 -0.02 0.07 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.01 -0.00 -0.01 -0.03 -0.02 -0.03 -0.01 -0.03 0.04 -0.02 0.01 0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1605

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1320

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 785

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 556

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 508

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 386

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 160

CWM

PFM

     

HCWM

1 profiles found for the same TF (TCF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000900.1 TCF3 ENCSR970OJY K562 Homo sapiens MA0091.2
Showing 1 profiles of page 1 from 1 pages
  • 1 (current)