Detailed information of deep learning profile BP000899.1

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This page shows detailed deep learning-derived predictions and motifs for TCF3 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: TCF3
Model ID: BP000899.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: E2A
JASPAR ID: MA0522.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17542  
Source: ENCSR000BQT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.01 0.00 0.04 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.07 0.00 0.01 0.04 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.07 0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.04 0.00 0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1613 1574 1536 1579 1617 1562 1472 1581 1505 1719 1538 1534 1536 1595 1469 1440 1786 1418 1636 1691 1632 1910 2112 2893 3 6684 7 3 8 0 48 943 1270 1073 1063 1428 1428 1390 1419 1497 1359 1509 1496 1467 1415 1526 1488 1528 1559 1575 ]
C [ 1779 1776 1773 1732 1782 1791 1842 1837 1939 1889 1886 1872 1960 1879 1828 2016 1761 2209 1899 1768 1909 1628 1748 2002 6693 6 3230 6686 6 2 2394 1895 1555 2104 1949 1698 1849 1985 1871 1884 1766 1782 1852 1823 1821 1794 1836 1841 1869 1778 ]
G [ 1736 1852 1850 1820 1768 1754 1752 1748 1759 1685 1771 1911 1705 1803 1796 1898 1889 1735 1649 2053 1952 1734 1800 1757 0 3 3108 5 1 6692 2370 1385 2611 1685 1787 1979 1867 1660 1903 1740 1799 1907 1757 1817 1844 1794 1811 1729 1758 1733 ]
T [ 1568 1494 1537 1565 1529 1589 1630 1530 1493 1403 1501 1379 1495 1419 1603 1342 1260 1334 1512 1184 1203 1424 1036 44 0 3 351 2 6681 2 1884 2473 1260 1834 1897 1591 1552 1661 1503 1575 1772 1498 1591 1589 1616 1582 1561 1598 1510 1610 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.01 0.01 -0.02 0.04 -0.03 -0.01 -0.03 -0.02 -0.03 -0.01 -0.00 -0.01 -0.01 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.07 -0.02 0.02 0.04 0.00 -0.03 0.02 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 0.02 -0.03 0.01 0.04 0.02 -0.02 0.07 0.01 0.01 0.02 0.01 0.01 ]
T [ -0.01 -0.01 -0.00 -0.01 -0.03 -0.02 -0.03 -0.01 -0.03 0.04 -0.02 0.01 0.01 -0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1605

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1320

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 785

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 556

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 508

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 386

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 160

CWM

PFM

     

HCWM

1 profiles found for the same TF (TCF3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000900.1 TCF3 ENCSR970OJY K562 Homo sapiens MA0091.2
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