Detailed information of deep learning profile BP000721.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000721.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000EHG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 ]
C [ -0.00 0.00 -0.00 0.00 0.11 0.00 0.09 0.00 0.00 0.00 -0.00 0.02 0.01 0.01 ]
G [ 0.00 0.00 0.02 -0.00 0.00 0.00 0.00 0.08 0.00 0.11 0.00 -0.00 0.00 -0.00 ]
T [ -0.00 -0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.08 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 17 18 13 20 16 17 13 17 13 15 18 15 12 15 12 15 12 16 22 17 23 19 21 13 19 21 20 22 24 19 19 19 20 25 21 17 14 16 3 0 54 0 8 0 0 31 1 3 13 12 ]
C [ 14 13 15 11 7 14 8 12 10 11 13 8 18 17 16 12 10 7 12 7 10 9 6 8 8 9 9 6 3 5 6 12 11 9 3 9 11 5 8 54 0 49 0 0 0 4 24 25 21 16 ]
G [ 11 8 13 11 17 12 17 11 14 17 14 16 13 9 12 11 11 13 4 12 7 10 13 14 4 12 8 7 6 2 4 6 7 7 9 14 20 33 5 0 0 0 46 0 53 16 11 13 15 11 ]
T [ 12 15 13 12 14 11 16 14 17 11 9 15 11 13 14 16 21 18 16 18 14 16 14 19 23 12 17 19 21 28 25 17 16 13 21 14 9 0 38 0 0 5 0 54 1 3 18 13 5 15 ]

Hypothetical CWM

   
A [ -0.00 -0.01 -0.00 -0.01 0.01 -0.02 -0.03 0.08 -0.07 0.02 -0.03 -0.03 0.03 -0.02 -0.00 0.01 0.01 ]
C [ 0.01 0.02 0.01 0.02 -0.00 0.02 0.11 -0.04 0.09 -0.03 0.02 -0.04 0.01 0.04 0.02 0.02 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.04 0.00 -0.04 0.01 -0.03 0.09 -0.05 0.11 0.01 -0.00 0.02 0.01 0.02 ]
T [ 0.00 0.00 0.00 -0.00 -0.03 0.03 -0.03 -0.03 0.02 -0.07 0.08 -0.03 -0.01 0.02 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3327

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000728.1 USF2 ENCSR945NFL SK-N-SH Homo sapiens MA0526.5
Showing 1 profiles of page 2 from 2 pages