Detailed information of deep learning profile BP000433.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in ascending aorta using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000433.1
Cell line/tissue: ascending aorta
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR960MDF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.05 0.10 -0.00 0.04 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.05 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.10 0.04 0.03 0.09 0.06 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3926 3422 3197 5149 6892 4618 3257 4273 3244 3653 4480 4894 4982 5072 4347 2427 3844 5284 1716 395 12983 939 2919 16003 237 7286 1062 351 608 2685 7487 1921 2621 6829 3326 5729 4026 4507 4365 3704 4834 6404 3720 4685 5089 5653 4945 4661 4812 4754 ]
C [ 4773 3347 4902 6391 3967 3650 2977 4713 8453 7069 6433 5595 5040 4246 4695 6377 4025 1993 15210 18494 791 11406 7855 655 102 230 949 255 1106 13786 1303 9563 6618 4790 4021 3704 3416 5577 6708 8059 6541 3751 5557 4540 4532 4256 4510 4750 5082 5073 ]
G [ 5014 6973 7005 3290 4703 4721 4213 4419 2821 3359 4212 4479 4340 3961 5044 2731 7014 8549 1154 139 3231 6335 1521 1576 18695 11461 10492 18263 15906 986 9423 5949 2273 5612 5350 4290 8304 5331 4466 2768 2927 5399 5258 5471 4878 4299 4439 5639 5242 5206 ]
T [ 5442 5413 4051 4325 3593 6166 8708 5750 4637 5074 4030 4187 4793 5876 5069 7620 4272 3329 1075 127 2150 475 6860 921 121 178 6652 286 1535 1698 942 1722 7643 1924 6458 5432 3409 3740 3616 4624 4853 3601 4620 4459 4656 4947 5261 4105 4019 4122 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.01 -0.01 0.01 -0.00 -0.02 0.03 -0.01 -0.01 0.05 -0.03 0.03 -0.03 -0.02 -0.02 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 0.07 0.10 -0.02 0.07 0.03 0.00 -0.01 -0.04 0.01 -0.02 -0.02 0.07 -0.02 0.03 0.02 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.02 0.03 -0.01 -0.01 0.05 0.03 -0.01 0.01 0.10 0.07 0.05 0.09 0.07 -0.02 0.07 0.03 -0.00 0.02 0.01 0.00 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.04 -0.02 -0.03 0.03 -0.02 -0.02 -0.04 0.01 -0.02 0.00 -0.01 -0.03 -0.01 0.02 -0.02 0.01 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 156

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 69

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages