Detailed information of deep learning profile BP000420.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000420.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR913SEI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4522 4338 4504 5300 5116 4813 4647 4872 4140 5007 5028 3922 4181 3616 6008 7085 2364 8298 2180 1143 1840 1650 239 6524 221 177 1437 7659 737 2881 259 1509 3575 4753 7141 5254 5791 5042 4653 4571 5181 4945 5882 7978 6288 4188 4729 4655 5517 5728 ]
C [ 5187 5153 5201 4546 4447 5127 5371 5224 5190 3369 3071 5015 5293 8057 4201 5018 5645 2113 5587 9545 836 16396 18917 11050 11735 19033 1915 1638 6852 3052 288 1531 8341 6235 3145 4879 4084 4526 4642 4367 3550 3282 4474 4434 4598 4565 3733 6216 6485 4902 ]
G [ 4879 4952 4714 4522 4392 4436 4540 5324 4043 6009 7217 6181 5063 3592 3653 4049 4607 6290 9853 1204 13721 1005 106 769 173 97 573 7062 10510 1151 18256 14523 2320 4232 6344 5021 4544 5037 5373 5883 6652 7603 4710 3333 3895 4117 5896 4922 3651 4562 ]
T [ 5006 5151 5175 5226 5639 5218 5036 4174 6221 5209 4278 4476 5057 4329 5732 3442 6978 2893 1974 7702 3197 543 332 1251 7465 287 15669 3235 1495 12510 791 2031 5358 4374 2964 4440 5175 4989 4926 4773 4211 3764 4528 3849 4813 6724 5236 3801 3941 4402 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.07 -0.03 0.01 -0.05 0.03 -0.08 -0.05 -0.04 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.05 0.14 -0.03 0.14 0.19 0.11 0.14 0.19 0.03 -0.02 0.05 0.08 -0.03 -0.02 0.06 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.01 0.14 -0.03 -0.04 0.00 -0.07 -0.02 -0.01 0.06 0.13 -0.02 0.18 0.12 -0.01 0.04 0.06 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.01 -0.06 -0.05 -0.07 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1530

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 377

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 131

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages