Detailed information of deep learning profile BP000414.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000414.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR899JSO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.11 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3822 3777 3890 4550 4421 4125 4087 4164 3519 4323 4256 3313 3637 3087 4949 5867 1964 7009 1768 1078 1540 1312 238 5772 169 135 1133 6142 579 2523 194 1169 3118 3972 6113 4460 4874 4288 4006 3887 4343 4237 4985 6882 5304 3482 3888 3849 4675 4926 ]
C [ 4198 4299 4395 3695 3643 4188 4381 4388 4256 2644 2612 4139 4297 6761 3487 4283 4779 1748 4969 7549 586 14164 15805 8755 9567 15946 1535 1276 5949 2193 153 1156 6847 5288 2518 3949 3247 3618 3735 3628 3032 2656 3658 3597 3759 3806 3017 5204 5405 3975 ]
G [ 4037 4057 3789 3688 3663 3675 3673 4317 3283 4980 5938 5154 4234 2945 3059 3353 3768 5255 7854 962 11627 530 78 610 164 80 400 6260 8647 889 15464 12267 1857 3348 5177 4135 3867 4135 4464 4847 5477 6303 3947 2682 3083 3362 4924 4111 2858 3724 ]
T [ 4364 4288 4347 4488 4694 4433 4280 3552 5363 4474 3615 3815 4253 3628 4926 2918 5910 2409 1830 6832 2668 415 300 1284 6521 260 13353 2743 1246 10816 610 1829 4599 3813 2613 3877 4433 4380 4216 4059 3569 3225 3831 3260 4275 5771 4592 3257 3483 3796 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.02 -0.09 -0.04 -0.04 0.06 -0.05 -0.03 -0.08 -0.04 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.02 0.04 -0.00 0.02 0.03 -0.01 0.05 0.12 -0.02 0.12 0.16 0.10 0.13 0.17 0.02 -0.02 0.05 0.08 -0.02 -0.02 0.06 0.04 0.00 0.01 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.03 0.04 0.06 -0.01 0.13 -0.03 -0.03 0.00 -0.06 -0.02 0.00 0.05 0.12 -0.02 0.18 0.12 -0.01 0.04 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.06 0.06 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3123

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages