Detailed information of deep learning profile BP000376.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000376.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR791AYW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3917 5163 6377 4830 3882 4384 3940 4198 4679 4953 4931 5019 4416 3076 4453 5213 2217 1326 11763 1567 3227 15382 371 7412 1407 446 558 3222 7704 1855 2910 6790 3371 5702 4240 4905 4461 4133 5016 6056 4101 4954 5163 5514 5105 4921 5000 4979 4992 4794 ]
C [ 5083 5911 4413 4220 3771 4938 7354 6585 5933 5398 5264 4745 5243 6523 4360 2499 14308 17825 1226 10380 7464 704 112 290 940 137 1061 13942 1214 9689 6373 4860 4356 3917 3707 5297 6471 7385 6194 4260 5411 4767 4613 4571 4774 4926 5115 5001 4957 5136 ]
G [ 6264 4125 4732 4871 4596 4767 3616 3992 4592 4810 4675 4335 4946 3337 6336 8458 1780 357 3774 7092 1924 2186 19102 11837 10877 18880 16517 888 9670 6048 2399 5829 5175 4263 8215 5402 4887 3287 3506 5350 5472 5486 5267 4658 4677 5527 5363 5295 5097 5302 ]
T [ 4531 4596 4273 5874 7546 5706 4885 5020 4591 4634 4925 5696 5190 6859 4646 3625 1490 287 3032 756 7180 1523 210 256 6571 332 1659 1743 1207 2203 8113 2316 6893 5913 3633 4191 3976 4990 5079 4129 4811 4588 4752 5052 5239 4421 4317 4520 4749 4563 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.01 0.02 -0.00 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.05 -0.06 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.02 -0.02 0.10 0.15 -0.02 0.10 0.04 0.00 -0.02 -0.06 0.00 -0.03 -0.02 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.05 -0.01 0.03 0.16 0.11 0.09 0.14 0.11 -0.02 0.11 0.04 -0.01 0.02 0.02 -0.00 0.04 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.07 0.03 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 499

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 56

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages