Detailed information of deep learning profile BP000374.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in placenta using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000374.1
Cell line/tissue: placenta
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR782BSY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.12 0.05 0.04 0.12 0.08 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3282 2721 2536 4538 6189 4050 2707 3617 2630 3084 3989 4245 4403 4490 3875 1952 3233 4620 1341 221 12311 682 2378 14911 112 6714 611 182 444 2082 6849 1480 2146 6200 2791 5268 3453 4099 3876 3227 4361 5757 3201 4082 4353 5031 4371 4046 4161 4288 ]
C [ 4318 2789 4639 5979 3484 3040 2377 4173 7896 6609 5769 5387 4643 3778 4061 5572 3316 1547 13896 16535 571 10665 7270 399 55 84 494 55 622 13068 650 8825 6187 4245 3503 3248 2917 5046 6218 7639 6125 3216 5152 4235 4094 3876 4022 4192 4483 4547 ]
G [ 4347 6623 6335 2732 4310 4187 3743 3896 2344 2855 3754 3835 3747 3432 4580 2259 6691 8018 832 85 2501 5237 1066 992 16705 10021 9608 16556 14647 517 8785 5360 1859 4918 4917 3757 7762 4565 3860 2123 2326 4895 4652 4748 4469 3704 3841 5136 4801 4540 ]
T [ 4975 4789 3412 3673 2939 5645 8095 5236 4052 4374 3410 3455 4129 5222 4406 7139 3682 2737 853 81 1539 338 6208 620 50 103 6209 129 1209 1255 638 1257 6730 1559 5711 4649 2790 3212 2968 3933 4110 3054 3917 3857 4006 4311 4688 3548 3477 3547 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.03 -0.02 0.01 -0.01 -0.03 0.03 -0.03 -0.02 0.07 -0.04 0.03 -0.05 -0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 -0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.03 -0.01 0.09 0.13 -0.03 0.08 0.04 -0.00 -0.01 -0.04 0.01 -0.03 -0.02 0.09 -0.02 0.05 0.03 0.02 0.01 0.00 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.03 -0.02 0.02 0.12 0.09 0.07 0.12 0.09 -0.02 0.09 0.03 0.00 0.03 0.02 0.01 0.03 0.01 ]
T [ -0.00 -0.00 0.01 0.00 0.01 -0.01 -0.02 -0.03 -0.06 -0.03 -0.05 0.04 -0.04 -0.05 -0.07 0.01 -0.04 -0.01 -0.03 -0.05 -0.02 0.02 -0.03 0.01 -0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 119

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages