Detailed information of deep learning profile BP000220.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000220.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR307PFP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.04 0.05 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4107 4209 3985 3934 3862 4647 4413 4236 4193 4299 3698 4466 4385 3446 3667 3178 5147 5958 2126 7322 1921 1077 1674 1368 242 6147 225 161 1297 6006 657 2851 159 1241 3233 4202 6181 4616 5003 4416 4116 4092 4559 4348 5006 6802 5343 3615 4047 3927 ]
C [ 4399 4257 4452 4473 4573 3972 3973 4423 4606 4540 4405 2979 2863 4370 4493 6947 3684 4495 5076 1840 4897 8142 672 14763 16481 8838 10212 16550 1725 1603 6660 2266 188 1439 7015 5426 2783 4084 3529 3838 3998 3795 3273 2934 3947 3855 4008 4041 3325 5344 ]
G [ 4310 4165 4187 4212 4122 3945 3881 3861 3893 4529 3697 5218 6072 5370 4459 3189 3214 3586 3949 5361 8418 1043 11903 568 70 758 154 95 512 6642 8427 1034 16234 12566 2141 3612 5382 4432 4132 4436 4640 5079 5550 6394 4196 3042 3477 3616 5028 4384 ]
T [ 4277 4462 4469 4474 4536 4529 4826 4573 4401 3725 5293 4430 3773 3907 4474 3779 5048 3054 5942 2570 1857 6831 2844 394 300 1350 6502 287 13559 2842 1349 10942 512 1847 4704 3853 2747 3961 4429 4403 4339 4127 3711 3417 3944 3394 4265 5821 4693 3438 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.01 -0.02 0.02 -0.05 -0.03 -0.02 0.04 -0.04 -0.02 -0.05 -0.03 -0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.09 -0.02 0.10 0.13 0.07 0.10 0.13 0.02 -0.01 0.04 0.05 -0.01 -0.01 0.04 0.03 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.04 -0.01 0.09 -0.02 -0.02 0.01 -0.05 -0.01 -0.00 0.04 0.09 -0.01 0.13 0.09 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.04 -0.04 0.04 -0.04 0.06 -0.02 -0.02 0.03 -0.02 -0.00 0.01 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 601

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages