Detailed information of deep learning profile BP000212.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000212.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR288YJL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.05 -0.00 -0.01 0.16 0.00 0.02 0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.18 0.28 0.00 0.08 0.03 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.02 0.02 0.00 0.00 0.01 0.01 0.00 0.00 0.29 0.12 0.12 0.24 0.17 ]
T [ 0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.01 -0.01 0.03 -0.00 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 9 7 7 7 7 7 12 7 10 7 9 9 5 7 11 5 6 6 8 3 3 6 4 10 9 7 8 10 3 6 6 13 12 8 6 1 2 0 10 1 1 25 1 8 36 0 12 0 0 1 ]
C [ 11 7 11 6 4 6 9 10 5 9 6 10 11 7 7 7 6 5 1 3 5 3 5 1 2 3 2 3 3 0 3 6 4 3 7 14 10 7 3 35 36 0 20 20 0 0 0 0 0 2 ]
G [ 12 16 12 16 18 17 11 15 16 14 17 9 20 14 16 19 16 19 23 20 23 24 21 24 26 25 24 19 21 28 26 14 18 16 10 12 3 23 19 0 0 7 14 0 0 37 25 32 37 34 ]
T [ 5 7 7 8 8 7 5 5 6 7 5 9 1 9 3 6 9 7 5 11 6 4 7 2 0 2 3 5 10 3 2 4 3 10 14 10 22 7 5 1 0 5 2 9 1 0 0 5 0 0 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.01 -0.00 -0.04 -0.03 0.04 -0.02 -0.05 0.07 -0.04 -0.03 0.17 -0.14 0.07 -0.11 -0.11 -0.09 ]
C [ 0.02 0.01 -0.00 0.02 0.07 0.04 -0.03 0.19 0.28 -0.07 0.16 0.06 -0.06 -0.08 -0.15 -0.03 -0.10 -0.08 ]
G [ -0.01 -0.00 -0.00 0.01 -0.03 0.04 0.05 -0.09 -0.09 0.08 0.05 -0.08 0.01 0.29 0.20 0.14 0.24 0.17 ]
T [ 0.00 0.01 0.02 0.01 0.04 -0.01 -0.02 -0.06 -0.15 -0.04 -0.13 0.12 -0.07 -0.08 -0.11 0.03 -0.08 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17028

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1011

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 24

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages