Detailed information of deep learning profile BP000090.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of mammary gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000090.1
Cell line/tissue: fibroblast of mammary gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.01 0.00 0.00 -0.00 -0.00 0.03 0.00 ]
C [ 0.32 0.12 0.14 0.34 0.00 0.00 0.01 0.01 0.00 -0.01 0.04 0.02 -0.00 -0.00 ]
G [ 0.01 0.01 0.00 0.01 0.00 0.06 0.10 0.00 0.33 0.20 -0.00 0.00 0.03 0.00 ]
T [ 0.00 0.00 0.02 0.00 0.20 -0.01 -0.00 0.07 0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 0 10 0 0 2 9 3 4 0 0 6 6 26 12 16 8 5 2 9 3 13 4 7 6 6 7 10 8 7 6 4 6 8 8 6 10 8 10 8 7 11 11 7 10 9 11 12 8 7 6 ]
C [ 48 36 31 48 1 2 18 6 0 3 27 29 1 11 12 24 34 34 33 34 23 22 31 30 32 24 20 23 26 32 28 29 20 21 23 18 20 19 20 20 19 16 18 15 17 22 17 18 21 18 ]
G [ 1 3 1 1 1 33 25 3 46 44 3 7 19 21 10 8 6 3 1 4 5 11 6 3 2 5 10 9 7 5 6 9 9 13 11 10 13 8 14 12 14 10 15 11 12 4 10 9 9 14 ]
T [ 0 0 17 0 45 5 3 36 3 2 13 7 3 5 11 9 4 10 6 8 8 12 5 10 9 13 9 9 9 6 11 5 12 7 9 11 8 12 7 10 5 12 9 13 11 12 10 14 12 11 ]

Hypothetical CWM

   
A [ -0.10 0.06 -0.14 -0.08 -0.02 0.16 -0.11 -0.02 -0.15 -0.07 -0.02 -0.00 0.06 0.03 ]
C [ 0.32 0.17 0.22 0.33 0.02 -0.06 0.06 0.10 -0.09 -0.09 0.08 0.04 -0.02 0.01 ]
G [ -0.12 -0.02 -0.17 -0.09 -0.04 0.09 0.21 -0.05 0.34 0.22 -0.02 0.06 0.09 0.03 ]
T [ -0.15 -0.12 0.11 -0.13 0.21 -0.01 -0.07 0.09 -0.06 -0.01 0.05 -0.02 -0.03 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20938

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages