Detailed information of deep learning profile BP000006.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in mammary epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000006.1
Cell line/tissue: mammary epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000ALV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.05 0.08 0.20 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4506 4310 4386 5063 4934 4627 4593 4689 4008 4933 4773 3926 4056 3651 5753 6753 2246 8188 2029 1249 1849 1522 176 6726 207 157 1265 6904 713 3195 167 1295 3706 4556 6872 5060 5684 4937 4564 4442 5177 4790 5686 7842 6057 4025 4555 4361 5307 5560 ]
C [ 4691 4762 4881 4172 4106 4677 4821 4863 4762 3189 3051 4639 4777 7351 3787 4696 5339 1818 5216 8711 611 15966 18011 9634 11198 18023 1771 1494 6792 2209 182 1259 7468 5777 2823 4307 3723 3994 4169 4009 3264 2941 4088 3934 4079 4217 3347 5913 6115 4499 ]
G [ 4447 4612 4312 4237 4123 4070 4191 4901 3808 5535 6665 5644 4884 3373 3467 3645 4375 5763 9263 1119 13141 539 54 569 111 56 422 6983 9568 1035 17672 14045 2203 3876 5812 4782 4247 4699 5002 5489 5967 7127 4341 3096 3599 3753 5379 4599 3252 4062 ]
T [ 4873 4833 4938 5045 5354 5143 4912 4064 5939 4860 4028 4308 4800 4142 5510 3423 6557 2748 2009 7438 2916 490 276 1588 7001 281 15059 3136 1444 12078 496 1918 5140 4308 3010 4368 4863 4887 4782 4577 4109 3659 4402 3645 4782 6522 5236 3644 3843 4396 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.05 0.03 -0.02 -0.07 -0.02 -0.00 -0.06 0.02 -0.08 -0.06 -0.05 0.06 -0.07 -0.03 -0.09 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.04 0.00 0.03 0.03 -0.01 0.05 0.14 -0.02 0.14 0.19 0.11 0.14 0.20 0.03 -0.03 0.06 0.08 -0.03 -0.03 0.07 0.05 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.02 0.14 -0.04 -0.04 0.00 -0.08 -0.03 -0.03 0.06 0.12 -0.03 0.20 0.13 -0.01 0.04 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.05 -0.06 -0.07 0.04 -0.07 0.10 -0.03 -0.04 0.04 -0.05 -0.02 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3996

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 363

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages