JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0897.1 Hmx2 Mus musculus Homeo NK
MA0897.2 Hmx2 Mus musculus Homeo NK
MA0898.1 Hmx3 Mus musculus Homeo NK
MA0898.2 Hmx3 Mus musculus Homeo NK
MA0899.1 HOXA10 Homo sapiens Homeo HOX
MA0899.2 HOXA10 Homo sapiens Homeo HOX
MA0900.1 HOXA2 Homo sapiens Homeo HOX
MA0900.2 HOXA2 Homo sapiens Homeo HOX
MA0900.3 HOXA2 Homo sapiens Homeo HOX
MA0901.1 HOXB13 Homo sapiens Homeo HOX
MA0901.2 HOXB13 Homo sapiens Homeo HOX
MA0901.3 HOXB13 Homo sapiens Homeo HOX
MA0902.1 HOXB2 Homo sapiens Homeo HOX
MA0902.2 HOXB2 Homo sapiens Homeo HOX
MA0902.3 HOXB2 Homo sapiens Homeo HOX
MA0903.1 HOXB3 Homo sapiens Homeo HOX
MA0903.2 HOXB3 Homo sapiens Homeo HOX
MA0904.1 Hoxb5 Mus musculus Homeo HOX
MA0904.2 HOXB5 Homo sapiens Homeo HOX
MA0904.3 HOXB5 Homo sapiens Homeo HOX
MA0905.1 HOXC10 Homo sapiens Homeo HOX
MA0905.2 HOXC10 Homo sapiens Homeo HOX
MA0906.1 HOXC12 Homo sapiens Homeo HOX
MA0906.2 HOXC12 Homo sapiens Homeo HOX
MA0907.1 HOXC13 Homo sapiens Homeo HOX
Showing 25 profiles of page 72 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.