JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0794.1 PROX1 Homo sapiens Homeo HD-PROS
MA0795.1 SMAD3 Homo sapiens SMAD/NF-1 SMAD
MA0796.1 TGIF1 Homo sapiens Homeo TALE-type
MA0797.1 TGIF2 Homo sapiens Homeo TALE-type
MA0798.1 RFX3 Homo sapiens Fork RFX-related
MA0798.2 RFX3 Homo sapiens Fork RFX-related
MA0798.3 RFX3 Homo sapiens Fork RFX-related
MA0799.1 RFX4 Homo sapiens Fork RFX-related
MA0799.2 RFX4 Homo sapiens Fork RFX-related
MA0799.3 RFX4 Homo sapiens Fork RFX-related
MA0800.1 EOMES Homo sapiens T-Box TBrain-related
MA0800.2 EOMES Homo sapiens T-Box TBrain-related
MA0801.1 MGA Homo sapiens T-Box TBX6-related
MA0802.1 TBR1 Homo sapiens T-Box TBrain-related
MA0802.2 TBR1 Homo sapiens T-Box TBrain-related
MA0803.1 TBX15 Homo sapiens T-Box TBX1-related
MA0804.1 TBX19 Homo sapiens T-Box Brachyury-related
MA0804.2 TBX19 Homo sapiens T-Box Brachyury-related
MA0805.1 TBX1 Homo sapiens T-Box TBX1-related
MA0806.1 TBX4 Homo sapiens T-Box TBX2-related
MA0807.1 TBX5 Homo sapiens T-Box TBX2-related
MA0808.1 TEAD3 Homo sapiens TEA TEF-1-related
MA0809.1 TEAD4 Homo sapiens TEA TEF-1-related
MA0809.2 TEAD4 Homo sapiens TEA TEF-1-related
MA0809.3 TEAD4 Homo sapiens TEA TEF-1-related
Showing 25 profiles of page 64 from 172 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.