JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1639.2 MEIS1 Homo sapiens Homeo TALE-type
MA1640.1 MEIS2 Homo sapiens Homeo TALE-type
MA1640.2 MEIS2 Homo sapiens Homeo TALE-type
MA1641.1 MYF5 Homo sapiens Basic MyoD/ASC-related
MA1641.2 MYF5 Homo sapiens Basic MyoD/ASC-related
MA1642.1 NEUROG2 Homo sapiens Basic Tal-related
MA1642.2 NEUROG2 Homo sapiens Basic Tal-related
MA1643.1 NFIB Homo sapiens SMAD/NF-1 Nuclear
MA1643.2 NFIB Homo sapiens SMAD/NF-1 Nuclear
MA1644.1 NFYC Homo sapiens Heteromeric Heteromeric
MA1644.2 NFYC Homo sapiens Heteromeric Heteromeric
MA1645.1 NKX2-2 Homo sapiens Homeo NK
MA1645.2 NKX2-2 Homo sapiens Homeo NK
MA1646.1 OSR2 Homo sapiens C2H2 More
MA1646.2 OSR2 Homo sapiens C2H2 More
MA1647.1 PRDM4 Homo sapiens C2H2 Factors
MA1647.2 Prdm4 Mus musculus C2H2 Factors
MA1647.3 Prdm4 Mus musculus C2H2 Factors
MA1648.1 TCF12 Homo sapiens Basic E2A
MA1648.2 TCF12 Homo sapiens Basic E2A
MA1649.1 ZBTB12 Homo sapiens C2H2 More
MA1649.2 ZBTB12 Homo sapiens C2H2 More
MA1650.1 ZBTB14 Homo sapiens C2H2 More
MA1650.2 ZBTB14 Homo sapiens C2H2 More
MA1651.1 ZFP42 Homo sapiens C2H2 More
MA1651.2 ZFP42 Homo sapiens C2H2 More
MA1652.1 ZKSCAN5 Homo sapiens C2H2 Factors
MA1652.2 ZKSCAN5 Homo sapiens C2H2 Factors
MA1653.1 ZNF148 Homo sapiens C2H2 More
MA1653.2 ZNF148 Homo sapiens C2H2 More
MA1654.1 ZNF16 Homo sapiens C2H2 More
MA1654.2 ZNF16 Homo sapiens C2H2 More
MA1655.1 ZNF341 Homo sapiens C2H2 Factors
MA1655.2 ZNF341 Homo sapiens C2H2 Factors
MA1656.1 ZNF449 Homo sapiens C2H2 More
MA1656.2 ZNF449 Homo sapiens C2H2 More
MA1657.1 ZNF652 Homo sapiens C2H2 More
MA1657.2 ZNF652 Homo sapiens C2H2 More
MA1659.1 ABF4 Arabidopsis thaliana Basic Group
MA1659.2 ABF4 Arabidopsis thaliana Basic Group
MA1660.1 NAC013 Arabidopsis thaliana GCM NAC
MA1660.2 NAC013 Arabidopsis thaliana GCM NAC
MA1661.1 GTL1 Arabidopsis thaliana Tryptophan Trihelix
MA1661.2 GTL1 Arabidopsis thaliana Tryptophan Trihelix
MA1662.1 AT3G10030 Arabidopsis thaliana Tryptophan Trihelix
MA1662.2 AT3G10030 Arabidopsis thaliana Tryptophan Trihelix
MA1663.1 NAC050 Arabidopsis thaliana GCM NAC
MA1663.2 NAC050 Arabidopsis thaliana GCM NAC
MA1663.3 NAC050 Arabidopsis thaliana GCM NAC
MA1664.1 HSFA6B Arabidopsis thaliana Heat HSF
Showing 50 profiles of page 63 from 86 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.