JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1604.1 Ebf2 Mus musculus Rel Early
MA1604.2 Ebf2 Mus musculus Rel Early
MA1606.1 Foxf1 Mus musculus Fork FOX
MA1606.2 Foxf1 Mus musculus Fork FOX
MA1607.1 Foxl2 Mus musculus Fork FOX
MA1607.2 Foxl2 Mus musculus Fork FOX
MA1608.1 Isl1 Mus musculus Homeo HD-LIM
MA1608.2 Isl1 Mus musculus Homeo HD-LIM
MA1615.1 Plagl1 Mus musculus C2H2 More
MA1615.2 Plagl1 Mus musculus C2H2 More
MA1616.1 Prdm15 Mus musculus C2H2 Factors
MA1616.2 Prdm15 Mus musculus C2H2 Factors
MA1618.1 Ptf1a Mus musculus
MA1618.2 Ptf1A Mus musculus
MA1619.1 Ptf1A Mus musculus Basic Tal-related
MA1619.2 Ptf1A Mus musculus Basic Tal-related
MA1620.1 Ptf1A Mus musculus Basic Tal-related
MA1620.2 Ptf1A Mus musculus Basic Tal-related
MA1623.1 Stat2 Mus musculus STAT STAT
MA1623.2 Stat2 Mus musculus STAT STAT
MA1624.1 Stat5a Mus musculus STAT STAT
MA1624.2 Stat5a Mus musculus STAT STAT
MA1625.1 Stat5b Mus musculus STAT STAT
MA1625.2 Stat5b Mus musculus STAT STAT
MA1627.1 Wt1 Mus musculus C2H2 More
MA1627.2 Wt1 Mus musculus C2H2 More
MA1628.1 Zic1::Zic2 Mus musculus C2H2 More
MA1628.2 Zic1::Zic2 Mus musculus C2H2 More
MA1629.1 Zic2 Mus musculus C2H2 More
MA1629.2 Zic2 Mus musculus C2H2 More
MA1630.1 Znf281 Mus musculus C2H2 More
MA1630.2 ZNF281 Homo sapiens C2H2 More
MA1630.3 ZNF281 Homo sapiens C2H2 More
MA1631.1 ASCL1 Homo sapiens Basic MyoD/ASC-related
MA1631.2 ASCL1 Homo sapiens Basic MyoD/ASC-related
MA1632.1 ATF2 Homo sapiens Basic Jun-related
MA1632.2 ATF2 Homo sapiens Basic Jun-related
MA1633.1 BACH1 Homo sapiens Basic Jun-related
MA1633.2 BACH1 Homo sapiens Basic Jun-related
MA1634.1 BATF Homo sapiens Basic B-ATF-related
MA1634.2 BATF Homo sapiens Basic B-ATF-related
MA1635.1 BHLHE22 Homo sapiens Basic Tal-related
MA1635.2 BHLHE22 Homo sapiens Basic Tal-related
MA1636.1 CEBPG Homo sapiens Basic CEBP-related
MA1636.2 CEBPG Homo sapiens Basic CEBP-related
MA1637.1 EBF3 Homo sapiens Rel Early
MA1637.2 EBF3 Homo sapiens Rel Early
MA1638.1 HAND2 Homo sapiens Basic Tal-related
MA1638.2 HAND2 Homo sapiens Basic Tal-related
MA1639.1 MEIS1 Homo sapiens Homeo TALE-type
Showing 50 profiles of page 62 from 86 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.